Browse Element(s) Details


Os.57408.1.S1_at

Description gb:AK111474.1
DB_XREF= gi:32996683
TID=Os.57408.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F04, full insert sequence.
FL= gb:AK111474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2155011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21520Os.17608.1.S1_s_at11/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21520OsAffx.24370.1.S1_at10/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21530OsAffx.24371.1.S1_at11/112+12777845..12778813expressed protein
LOC_Os02g21540OsAffx.12149.1.S1_at11/112+12780483..12782727hypothetical protein
LOC_Os02g21550Os.57408.1.S1_at11/112+12788664..12790742oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g21560NANA2+12798340..12804725retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g21570Os.50558.1.A1_at5/112+12812002..12812640expressed protein
LOC_Os02g21580NANA2+12815510..12817126expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009813biological_processflavonoid biosynthesis
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57408.1.S1_at--307--3211Chr02:12789933..12789957 (25 bp)
CAAGGCCCGATCTCGTGATGGGCAT
LOC_Os02g21550
Os.57408.1.S1_at--440--7651Chr02:12790369..12790393 (25 bp)
GGGATGTTCAGAAGCCCGGTGCATA
LOC_Os02g21550
Os.57408.1.S1_at--888--2671Chr02:12790440..12790464 (25 bp)
AAGCGGCTGACACTGTACAAGAAAA
LOC_Os02g21550
Os.57408.1.S1_at--503--9571Chr02:12790480..12790504 (25 bp)
TCTTGGTTGGGCTCTCTGAACATTT
LOC_Os02g21550
Os.57408.1.S1_at--612--7571Chr02:12790488..12790512 (25 bp)
GGGCTCTCTGAACATTTTTCTCGAG
LOC_Os02g21550
Os.57408.1.S1_at--409--5131Chr02:12790513..12790537 (25 bp)
GCACAAGATTTGTTGACACGCTCAA
LOC_Os02g21550
Os.57408.1.S1_at--558--2171Chr02:12790528..12790552 (25 bp)
ACACGCTCAAGATCAGTCCTTAGTT
LOC_Os02g21550
Os.57408.1.S1_at--884--7251Chr02:12790543..12790567 (25 bp)
GTCCTTAGTTTCTTAGGCTATTGGC
LOC_Os02g21550
Os.57408.1.S1_at--875--10091Chr02:12790556..12790580 (25 bp)
TAGGCTATTGGCAATCCACTCGTGC
LOC_Os02g21550
Os.57408.1.S1_at--149--591Chr02:12790569..12790593 (25 bp)
ATCCACTCGTGCTGTATTGCAATTG
LOC_Os02g21550
Os.57408.1.S1_at--206--5091Chr02:12790650..12790674 (25 bp)
GCACCTAGTGCATGCAAGTCAACAT
LOC_Os02g21550
Target Sequence 
CAAGGCCCGATCTCGTGATGGGCATAAAGCCNCACTCCGACGGCACGGTCATCACCGTTCTCCTGGTTGCCCGCGGCGCC
GACGGGCTTCAGGTTCTCAGGNATGGGGTCTGGTACAGCGTGCCNNNATCATCGAGCACTCACGCCTTGNTGATCAATGT
AGGGGAATCCANGGAGGTANTGAGCAATGGGATGTTCAGAAGCCCGGTGCATAGGGTTGTGANCAGTGCAGAGAANGAGA
GGATCTCGCTGGNCATGAGAAGCGGCTGACACTGTACAAGAAAATGAAAGCAAGGGACTTCTTGGTTGGGCTCTCTGAAC
ATTTTTCTCGAGGCACAAGATTTGTTGACACGCTCAAGATCAGTCCTTAGTTTCTTAGGCTATTGGCAATCCACTCGTGC
TGTATTGCAATTGCAGAGGTAACAGAAAGTATTTTTAGCACCTAGGTGTGTGTGTATATATATATATATGCACCTAGTGC
ATGCAAGTCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis