Browse Element(s) Details


Os.17608.1.S1_s_at

Description gb:AK067650.1
DB_XREF= gi:32977668
TID=Os.17608.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112A05, full insert sequence.
FL= gb:AK067650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2152011/11chalcone isomerase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21490Os.48039.1.A1_at11/112+12741611..12746532Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein
LOC_Os02g21510Os.54297.1.S1_at11/112+12758247..12762201NOL1/NOP2/sun family protein, putative, expressed
LOC_Os02g21520Os.17608.1.S1_s_at11/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21520OsAffx.24370.1.S1_at10/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21530OsAffx.24371.1.S1_at11/112+12777845..12778813expressed protein
LOC_Os02g21540OsAffx.12149.1.S1_at11/112+12780483..12782727hypothetical protein
LOC_Os02g21550Os.57408.1.S1_at11/112+12788664..12790742oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17608.1.S1_s_at--477--2351Chr02:12770274..12770296 (23 bp)
AAAGCACCGGTTGTGAAATCATTGA
LOC_Os02g21520
Os.17608.1.S1_s_at--662--2672Chr02:12770288..12770312 (25 bp)
AATCATTGAGTATAATTCTCGTTAG
LOC_Os02g21520
Os.17608.1.S1_s_at--361--111Chr02:12770302..12770326 (25 bp)
ATTCTCGTTAGAGATGTTGATGGCA
LOC_Os02g21520
Os.17608.1.S1_s_at--1005--831Chr02:12770321..12770345 (25 bp)
ATGGCAAGACGTTTGTGAAGGCTCT
LOC_Os02g21520
Os.17608.1.S1_s_at--1067--8151Chr02:12770446..12770470 (25 bp)
GGAACAACTGTCTATCTAACTTGGC
LOC_Os02g21520
Os.17608.1.S1_s_at--1013--10131Chr02:12770458..12770482 (25 bp)
TATCTAACTTGGCTTGAACCCTCGA
LOC_Os02g21520
Os.17608.1.S1_s_at--96--2811Chr02:12771663..12771687 (25 bp)
AAGATCCATGTCAAGTTGATGCTGA
LOC_Os02g21520
Os.17608.1.S1_s_at--629--6651Chr02:12771677..12771701 (25 bp)
GTTGATGCTGAAATCACATCAGCCA
LOC_Os02g21520
Os.17608.1.S1_s_at--1042--6911Chr02:12771735..12771759 (25 bp)
GTAGTTCTCCAGTATCCCCTACTCT
LOC_Os02g21520
Os.17608.1.S1_s_at--717--1191Chr02:12771745..12771769 (25 bp)
AGTATCCCCTACTCTGAGATCTTCT
LOC_Os02g21520
Os.17608.1.S1_s_at--1150--4171Chr02:12771751..12771775 (25 bp)
CCCTACTCTGAGATCTTCTACTGCA
LOC_Os02g21520
Target Sequence 
AAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATNA
CATTATTGCTCGTNCAAATAAAAAANCCANAGTGCTGAGGAAGANACAGAGCCTGTCAANCTTTCCNAGAAANACCTTTC
TAGGGCGTANTCTNAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGANACTTCTGATCTCAATTNCAGGA
AACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACNTGTTAATTATGCNCTATANGATGGCTTCTTNGGTA
GTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17608.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis