Browse Element(s) Details


OsAffx.24370.1.S1_at

Description tigr:9630.m02063
TID=OsAffx.24370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 02106 domain.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2152010/11chalcone isomerase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21490Os.48039.1.A1_at11/112+12741611..12746532Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein
LOC_Os02g21510Os.54297.1.S1_at11/112+12758247..12762201NOL1/NOP2/sun family protein, putative, expressed
LOC_Os02g21520Os.17608.1.S1_s_at11/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21520OsAffx.24370.1.S1_at10/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21530OsAffx.24371.1.S1_at11/112+12777845..12778813expressed protein
LOC_Os02g21540OsAffx.12149.1.S1_at11/112+12780483..12782727hypothetical protein
LOC_Os02g21550Os.57408.1.S1_at11/112+12788664..12790742oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24370.1.S1_at--754--6311Chr02:12770347..12770371 (25 bp)
GATGACATTATTGCTCGTCAAATAA
LOC_Os02g21520
OsAffx.24370.1.S1_at--1036--2371Chr02:12770372..12770396 (25 bp)
AAAAACCAAGTGCTGAGGAAGAACA
LOC_Os02g21520
OsAffx.24370.1.S1_at--1110--5491Chr02:12770392..12770416 (25 bp)
GAACAGAGCCTGTCAACTTTCCAGA
LOC_Os02g21520
OsAffx.24370.1.S1_at--1000--4471Chr02:12770399..12770423 (25 bp)
GCCTGTCAACTTTCCAGAAAACCTT
LOC_Os02g21520
OsAffx.24370.1.S1_at--540--5431Chr02:12770473..12770652 (25 bp)
GAACCCTCGAAACTTCTGAGAATAG
LOC_Os02g21520
OsAffx.24370.1.S1_at--964--6351Chr02:12770652..12770676 (25 bp)
GATGCCATTTTTCATGCACTGACAT
LOC_Os02g21520
OsAffx.24370.1.S1_at--622--2011Chr02:12770692..12770716 (25 bp)
ACTCTTTAACAAGTCAGGTGTTCTT
LOC_Os02g21520
OsAffx.24370.1.S1_at--379--1051Chr02:12770707..12770731 (25 bp)
AGGTGTTCTTACTCATTTGTGACAA
LOC_Os02g21520
OsAffx.24370.1.S1_at--289--5611NONE
GACAATAAGATCTCAATTGCAGGAA
NONE
OsAffx.24370.1.S1_at--170--4411Chr02:12771698..12771722 (25 bp)
GCCACTGTTAATTATGCGCTATACG
LOC_Os02g21520
OsAffx.24370.1.S1_at--580--10431Chr02:12771709..12771733 (25 bp)
TTATGCGCTATACGATGGCTTCTTG
LOC_Os02g21520
Target Sequence 
GATGACATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCAGAAAACCTTTCT
AGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAAACTTCTGAGAATAGATGCCATTT
TTCATGCACTGACATATCTGCCAAGTGCCAACTCTTTAACAAGTCAGGTGTTCTTACTCATTTGTGACAATAAGATCTCA
ATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTT
CTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis