Browse Element(s) Details


Os.50561.1.S1_at

Description gb:AK121849.1
DB_XREF= gi:37991472
TID=Os.50561.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101L11, full insert sequence.
FL= gb:AK121849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0987011/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed
LOC_Os10g09860OsAffx.6627.1.S1_at11/1110+5100872..5102305Chalcone synthase 8, putative
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein
LOC_Os10g09900OsAffx.20676.1.S1_at11/1110+5128002..5131279transposon protein, putative, Mutator sub-class
LOC_Os10g09910OsAffx.30364.1.S1_x_at11/1110+5131494..5132315hypothetical protein
LOC_Os10g09920OsAffx.30365.1.S1_at11/1110+5135311..5135697Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50561.1.S1_at--347--9351Chr10:5107657..5107681 (25 bp)
TCGAGGATCTTAAGAGCAGTGGAAT
LOC_Os10g09870
Os.50561.1.S1_at--347--5931Chr10:5107644..5107668 (25 bp)
GAGCAGTGGAATGAAGCTTGCAACT
LOC_Os10g09870
Os.50561.1.S1_at--180--4931Chr10:5107629..5107653 (25 bp)
GCTTGCAACTGAGGAAGCACCATCT
LOC_Os10g09870
Os.50561.1.S1_at--346--10751Chr10:5107627..5107651 (25 bp)
TTGCAACTGAGGAAGCACCATCTCC
LOC_Os10g09870
Os.50561.1.S1_at--900--5151Chr10:5107625..5107649 (25 bp)
GCAACTGAGGAAGCACCATCTCCAT
LOC_Os10g09870
Os.50561.1.S1_at--1090--3251Chr10:5107624..5107648 (25 bp)
CAACTGAGGAAGCACCATCTCCATC
LOC_Os10g09870
Os.50561.1.S1_at--619--9491Chr10:5107607..5107631 (25 bp)
TCTCCATCCAGTAATGCTGCCATGC
LOC_Os10g09870
Os.50561.1.S1_at--302--631Chr10:5107594..5107618 (25 bp)
ATGCTGCCATGCCAGGCTCTGAGCC
LOC_Os10g09870
Os.50561.1.S1_at--739--9191Chr10:5107590..5107614 (25 bp)
TGCCATGCCAGGCTCTGAGCCTAGT
LOC_Os10g09870
Os.50561.1.S1_at--441--591Chr10:5107586..5107610 (25 bp)
ATGCCAGGCTCTGAGCCTAGTGCGC
LOC_Os10g09870
Os.50561.1.S1_at--1012--911Chr10:5107581..5107605 (25 bp)
AGGCTCTGAGCCTAGTGCGCCGCCA
LOC_Os10g09870
Target Sequence 
TCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCAACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCAGGC
TCTGAGCCTAGTGCGCCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis