Browse Element(s) Details


Os.50582.1.S1_at

Description gb:AK121938.1
DB_XREF= gi:37991561
TID=Os.50582.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107C14, full insert sequence.
FL= gb:AK121938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3701011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36990OsAffx.19542.3.S1_x_at7/117+22159437..22164971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g36990OsAffx.9949.1.S1_at1/117+22159437..22164971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g37000OsAffx.28789.1.S1_at11/117+22167230..22167607hypothetical protein
LOC_Os07g37010Os.50582.1.S1_at11/117+22167828..22170029Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g37020OsAffx.5556.1.S1_at11/117+22181189..22182168hypothetical protein
LOC_Os07g37030Os.2248.1.S1_at11/117+22182713..22185239Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
LOC_Os07g37040Os.13496.1.S1_at11/117+22185662..22187362PB1 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50582.1.S1_at--873--3631Chr07:22168747..22168767 (21 bp)
CTTGCCCCTTTGTAAATAGCGAGAA
LOC_Os07g37010
Os.50582.1.S1_at--746--4391Chr07:22168207..22168231 (25 bp)
GCCAACAGCGCCGATGCGAAGAGGC
LOC_Os07g37010
Os.50582.1.S1_at--876--2791Chr07:22168189..22168213 (25 bp)
AAGAGGCGCTGCATGGGCCCACCTC
LOC_Os07g37010
Os.50582.1.S1_at--555--5711Chr07:22168102..22168126 (25 bp)
GACTCGGACGACAGCTGGAAGAGCT
LOC_Os07g37010
Os.50582.1.S1_at--48--1631Chr07:22168081..22168105 (25 bp)
AGCTGGAAATTTGCTCTTGCCCTGC
LOC_Os07g37010
Os.50582.1.S1_at--630--8151Chr07:22168077..22168101 (25 bp)
GGAAATTTGCTCTTGCCCTGCTCTT
LOC_Os07g37010
Os.50582.1.S1_at--493--10651Chr07:22168015..22168039 (25 bp)
TTCCCTCTATTTTAATCTTTTCGAG
LOC_Os07g37010
Os.50582.1.S1_at--436--9751Chr07:22168003..22168027 (25 bp)
TAATCTTTTCGAGGTAAAGCAGGAA
LOC_Os07g37010
Os.50582.1.S1_at--1101--9731Chr07:22167947..22167971 (25 bp)
TAATTGCTTTTTTTGCTCGTCTTTT
LOC_Os07g37010
Os.50582.1.S1_at--248--10011Chr07:22167920..22167944 (25 bp)
TAGGCTAGTTTTGTTTTTGTTCAGA
LOC_Os07g37010
Os.50582.1.S1_at--625--6991Chr07:22167894..22167918 (25 bp)
GTACTGGATGTTAAGGGCGATGAAT
LOC_Os07g37010
Target Sequence 
CTTGCCCCTTTGTAAATAGCGAGAAGTTGCGGGAGTGCGGCGAGGTGATGGCGGCGGCCTGCGGCGTCGGGCCCAGCTGG
GCGGCGGCGGCGACGAGCGCCGAGACGCCGGTGACGGTGCTCGGCCACCACCGGAGCGCGAGCTCCGAGAGCGAGCGCAC
CACCACCGTCGGATCGGCGGCCAACAGCGCCGATGCGAAGAGGCGCTGCATGGGCCCACCTCGGCAGTGGGGGGTAGGCG
GCCCTGATGAGTGATGAGGCAACGTGAGCGAGAGATAGGGTGACGACTCGGACGACAGCTGGAAGAGCTGGAAATTTGCT
CTTGCCCTGCTCTTTCTTTCATTCACCTTTCCTTTTCTTTCCGATTCTTTTTTCCCTCTATTTTAATCTTTTCGAGGTAA
AGCAGGAATGGAGATAATTGGTGGTGGTAGCTGTCATTTTAATTGCTTTTTTTGCTCGTCTTTTTTTAGGCTAGTTTTGT
TTTTGTTCAGAAGTACTGGATGTTAAGGGCGATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis