Browse Element(s) Details


Os.50608.1.S1_at

Description gb:AK122064.1
DB_XREF= gi:37991710
TID=Os.50608.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115L08, full insert sequence.
FL= gb:AK122064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2068911/113' exoribonuclease family domain 1-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20630OsAffx.18962.1.S1_at10/1111+11934921..11935356hypothetical protein
LOC_Os11g20630Os.20212.1.S1_at5/1111+11934921..11935356hypothetical protein
LOC_Os11g20640OsAffx.19542.3.S1_x_at7/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20640OsAffx.21754.1.S1_x_at1/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20650NANA11+11946602..11948046retrotransposon protein, putative, LINE subclass
LOC_Os11g20660OsAffx.31078.1.S1_at11/1111+11950768..11952335hypothetical protein
LOC_Os11g20670Os.7307.3.S1_x_at1/1111+11953647..11954911retrotransposon protein, putative, unclassified
LOC_Os11g20689Os.8896.1.S1_a_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689Os.50608.1.S1_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689OsAffx.21235.1.S1_at1/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20710NANA11+11975264..11975976retrotransposon, putative, centromere-specific
LOC_Os11g20720NANA11+11977447..11979306retrotransposon, putative, centromere-specific
LOC_Os11g20730NANA11+11979889..11980374hypothetical protein
LOC_Os11g20740NANA11+11984505..11984800hypothetical protein
LOC_Os11g20750Os.5711.1.S1_at2/1111+11986947..11988625hypothetical protein
LOC_Os11g20750OsAffx.30488.1.S1_at1/1111+11986947..11988625hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50608.1.S1_at--844--9451Chr11:11959255..11959279 (25 bp)
TCTGTATGCCCGTGAAACTTCTATA
LOC_Os11g20689
Os.50608.1.S1_at--1069--8471Chr11:11959309..11959333 (25 bp)
TGGCTTTATTTAATCCTCTCGTGCA
LOC_Os11g20689
Os.50608.1.S1_at--250--7071Chr11:11959437..11959461 (25 bp)
GTAAGGCTTACTGGGCATCTCCAAT
LOC_Os11g20689
Os.50608.1.S1_at--235--2711Chr11:11959475..11959499 (25 bp)
AAGCTTCACCTGAAATCTAGTCGTG
LOC_Os11g20689
Os.50608.1.S1_at--1070--9771Chr11:11959510..11959534 (25 bp)
TAAGATGCGCAAGGCTTCTCATCCT
LOC_Os11g20689
Os.50608.1.S1_at--35--2671Chr11:11959537..11959561 (25 bp)
AAGCCTGGTCCAAGCATCAATTGCT
LOC_Os11g20689
Os.50608.1.S1_at--417--371Chr11:11959552..11959576 (25 bp)
ATCAATTGCTTGCTGCTTGCCTAAT
LOC_Os11g20689
Os.50608.1.S1_at--251--1191Chr11:11959581..11959605 (25 bp)
AGTAGTCAGCAATAGCCTTCCTCAA
LOC_Os11g20689
Os.50608.1.S1_at--64--5951Chr11:11959649..11959673 (25 bp)
GAGCACTTTCATAGTGGTCTCTACT
LOC_Os11g20689
Os.50608.1.S1_at--550--7811Chr11:11959664..11959688 (25 bp)
GGTCTCTACTGGAATTTATCTACTT
LOC_Os11g20689
Os.50608.1.S1_at--510--5531Chr11:11959707..11959731 (25 bp)
GAAACAACCTAACTCACAGCTTTAT
LOC_Os11g20689
Target Sequence 
TCTGTATGCCCGTGAAACTTCTATATCCGTTTGCATACATGGCATATACAGAGGTGGCTTTATTTAATCCTCTCGTGCAG
CTCAGGGATGCTAAATTTGAAGGAGCTCTGTTTGATCAGTGGGAAGGCATCTTGGTTAGCATACCTGGTAATCACTGATT
TCATTATTGGTTCCTTCTCTTTGTAAGGCTTACTGGGCATCTCCAATAAGTCAAATTGAAAAGCTTCACCTGAAATCTAG
TCGTGATACATTAAATAAGATGCGCAAGGCTTCTCATCCTTGAAGCCTGGTCCAAGCATCAATTGCTTGCTGCTTGCCTA
ATGTCAAGTAGTCAGCAATAGCCTTCCTCAAGGGATGATAGTTATTTTGTCATGATTGTGGACATTAATGTTTAGAGCAC
TTTCATAGTGGTCTCTACTGGAATTTATCTACTTCCAGTAATACTACCAGTAGAAACAACCTAACTCACAGCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis