Browse Element(s) Details


Os.50626.1.S1_at

Description gb:AK122183.1
DB_XREF= gi:37991829
TID=Os.50626.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150B12, full insert sequence.
FL= gb:AK122183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3403011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33990NANA10+17800160..17800743expressed protein
LOC_Os10g34000Os.46867.2.S1_x_at11/1110+17811393..17813051aquaporin PIP2.4, putative
LOC_Os10g34010NANA10+17815487..17815951hypothetical protein
LOC_Os10g34020Os.39228.1.S1_at11/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34020Os.46635.1.S1_x_at1/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34030Os.46663.1.S1_x_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34030Os.50626.1.S1_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34040OsAffx.20242.2.S1_at11/1110+17839517..17842712nodulin, putative, expressed
LOC_Os10g34050OsAffx.30663.1.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.1.S1_x_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.2.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.8016.1.S1_x_at1/1110+17843253..17845651hypothetical protein
LOC_Os10g34057NANA10+17846411..17846700NA

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50626.1.S1_at--504--2511Chr10:17822051..17822075 (25 bp)
AACATCAAGCATATTCTGTGGACAA
LOC_Os10g34030
Os.50626.1.S1_at--255--351Chr10:17822016..17822040 (25 bp)
ATAACTGCCAACTAATTGCCAGAAT
LOC_Os10g34030
Os.50626.1.S1_at--525--3171Chr10:17821981..17822005 (25 bp)
CAATATTACCTCTCAAATGGAACAG
LOC_Os10g34030
Os.50626.1.S1_at--1076--3511Chr10:17821918..17821942 (25 bp)
CATGATTATCATGCTTTCAGCAGAA
LOC_Os10g34030
Os.50626.1.S1_at--10--5591Chr10:17821896..17821920 (25 bp)
GAAATAAGTTTACTCTTCTTTCCAT
LOC_Os10g34030
Os.50626.1.S1_at--225--3571Chr10:17821874..17821898 (25 bp)
CATAACCCCTCAACCGTGGCAGTAA
LOC_Os10g34030
Os.50626.1.S1_at--1129--10451Chr10:17821835..17821859 (25 bp)
TTAGCGTGTCTGATGTCTTTCTTAC
LOC_Os10g34030
Os.50626.1.S1_at--315--7131Chr10:17821821..17821845 (25 bp)
GTCTTTCTTACTAGGAACCACCTTG
LOC_Os10g34030
Os.50626.1.S1_at--447--1711Chr10:17821805..17821829 (25 bp)
ACCACCTTGATGACTGAATCTTGCC
LOC_Os10g34030
Os.50626.1.S1_at--344--8951Chr10:17821795..17821819 (25 bp)
TGACTGAATCTTGCCTCTGTTGCAG
LOC_Os10g34030
Os.50626.1.S1_at--12--10711Chr10:17821785..17821809 (25 bp)
TTGCCTCTGTTGCAGCCTAGTGAAA
LOC_Os10g34030
Target Sequence 
AACATCAAGCATATTCTGTGGACAAATATGTTCTAATAACTGCCAACTAATTGCCAGAATATACGAAATACAATATTACC
TCTCAAATGGAACAGGCATATAGGATATGATAGACAAGATAGTTTTAAGGGAGCATGATTATCATGCTTTCAGCAGAAAT
AAGTTTACTCTTCTTTCCATAACCCCTCAACCGTGGCAGTAAAAGGAACCGAGTTATTAGCGTGTCTGATGTCTTTCTTA
CTAGGAACCACCTTGATGACTGAATCTTGCCTCTGTTGCAGCCTAGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis