Browse Element(s) Details


Os.50801.1.S1_at

Description gb:AK058657.1
DB_XREF= gi:32968675
TID=Os.50801.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F09, full insert sequence.
FL= gb:AK058657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1756011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17510Os.47463.1.S1_x_at6/117+10345196..10350434transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17510Os.14491.2.S1_x_at5/117+10345196..10350434transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17520OsAffx.28494.1.S1_at11/117+10351363..10353603hypothetical protein
LOC_Os07g17530NANA7+10359057..10364810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17540Os.14491.2.S1_x_at3/117+10365324..10368201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17540Os.47463.1.S1_x_at3/117+10365324..10368201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17550OsAffx.16312.1.S1_at11/117+10370937..10371681hypothetical protein
LOC_Os07g17560Os.50801.1.S1_at11/117+10372682..10373402expressed protein
LOC_Os07g17570NANA7+10374748..10375149transposon protein, putative, unclassified
LOC_Os07g17580NANA7+10378192..10382205retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17590NANA7+10385512..10387997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17600NANA7+10391310..10391612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17610NANA7+10394717..10401088retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50801.1.S1_at--368--151Chr07:10373213..10373237 (25 bp)
ATTAGTCCGTGGGATGGGCACGTCC
LOC_Os07g17560
Os.50801.1.S1_at--387--5091Chr07:10373050..10373074 (25 bp)
GCACCGCGATGGGAGGCCTAGATCT
LOC_Os07g17560
Os.50801.1.S1_at--689--6371Chr07:10372930..10372954 (25 bp)
GATCCGGCCTCGTCTTTGTTCTCAT
LOC_Os07g17560
Os.50801.1.S1_at--338--10251Chr07:10372916..10372940 (25 bp)
TTTGTTCTCATCCTCGGCGGTTTGT
LOC_Os07g17560
Os.50801.1.S1_at--863--4671Chr07:10372900..10372924 (25 bp)
GCGGTTTGTCCATGGCGAGTACGAC
LOC_Os07g17560
Os.50801.1.S1_at--422--7571Chr07:10372808..10372832 (25 bp)
GGGCCCAAGACCATGTGCGGCATGC
LOC_Os07g17560
Os.50801.1.S1_at--279--1731Chr07:10372799..10372823 (25 bp)
ACCATGTGCGGCATGCATCGGGAGC
LOC_Os07g17560
Os.50801.1.S1_at--161--3532Chr10:3669696..3669715 (20 bp)
CATGCATCGGGAGCGCAGATCTGGT
NONE
Os.50801.1.S1_at--11--4591Chr07:10372776..10372800 (25 bp)
GCGCAGATCTGGTGCCGGCGACACC
LOC_Os07g17560
Os.50801.1.S1_at--35--3931Chr07:10372761..10372785 (25 bp)
CGGCGACACCCTTGATTTGCAATGT
LOC_Os07g17560
Os.50801.1.S1_at--181--5232Chr10:3669910..3669956 (25 bp)
GAATTTGTATTTGTGACATGTTCTT
NONE
Target Sequence 
ATTAGTCCGTGGGATGGGCACGTCCGGGCCTCCCCTTGCCCTCCAGCGTCACGCTGCCAACCTCCTCTCCGACTCCAACT
TGTCCCCTGACCTCCTCTACCTCACCATCGCCACTCCAGCTCGCTCCACCCTCCCTCCCCCCTCCCATTCTGCCTCCCCT
GCCGCACCGCGATGGGAGGCCTAGATCTGGGCGGAGGGGAGACGACCGGCGGGTGGCGGCGTTCGTCCACCTCTCTCCCC
TCTCCACCGGCGAGATCGATCCGCCGCCACCGCTATCGGCGCGGATCCGGCCTCGTCTTTGTTCTCATCCTCGGCGGTTT
GTCCATGGCGAGTACGACAAAGGGCAAGGAGGATGGTGGCGGTGACCGCGAGGAGGAGGAGGCCGCCGCGAGCCGGTCGT
CGGTGGGGCCCAAGACCATGTGCGGCATGCATCGGGAGCGCAGATCTGGTGCCGGCGACACCCTTGATTTGCAATGTGAA
TTTGATATGTGAATTTGTATTTGTGACATGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis