Browse Element(s) Details


OsAffx.16312.1.S1_at

Description tigr:9635.m01765
TID=OsAffx.16312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1755011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17510Os.47463.1.S1_x_at6/117+10345196..10350434transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17510Os.14491.2.S1_x_at5/117+10345196..10350434transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17520OsAffx.28494.1.S1_at11/117+10351363..10353603hypothetical protein
LOC_Os07g17530NANA7+10359057..10364810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17540Os.14491.2.S1_x_at3/117+10365324..10368201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17540Os.47463.1.S1_x_at3/117+10365324..10368201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17550OsAffx.16312.1.S1_at11/117+10370937..10371681hypothetical protein
LOC_Os07g17560Os.50801.1.S1_at11/117+10372682..10373402expressed protein
LOC_Os07g17570NANA7+10374748..10375149transposon protein, putative, unclassified
LOC_Os07g17580NANA7+10378192..10382205retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17590NANA7+10385512..10387997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17600NANA7+10391310..10391612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17610NANA7+10394717..10401088retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16312.1.S1_at--1135--5991Chr07:10371006..10371030 (25 bp)
GAGACCTTGCTGCTGGAACACATAT
LOC_Os07g17550
OsAffx.16312.1.S1_at--918--271Chr07:10371029..10371053 (25 bp)
ATATGGCTTCCATTGTGTCCGAATC
LOC_Os07g17550
OsAffx.16312.1.S1_at--216--9311Chr07:10371057..10371077 (21 bp)
TCCCCAAGGCTTAGAGCATCGCGAA
LOC_Os07g17550
OsAffx.16312.1.S1_at--1059--3091Chr07:10371269..10371293 (25 bp)
AATAGTGGATATTCGGTGGCTAACG
LOC_Os07g17550
OsAffx.16312.1.S1_at--692--2312Chr07:10371294..10371318 (25 bp)
AAAGTGCAAACCCTGGATGCCCCTT
LOC_Os07g17550
OsAffx.16312.1.S1_at--796--6351Chr07:10371309..10371333 (25 bp)
GATGCCCCTTGTCGCAAATGATTGC
LOC_Os07g17550
OsAffx.16312.1.S1_at--343--731Chr07:10371326..10371350 (25 bp)
ATGATTGCTATATCTTGTCCGTGCC
LOC_Os07g17550
OsAffx.16312.1.S1_at--732--10811Chr07:10371340..10371364 (25 bp)
TTGTCCGTGCCTAAGCCATTTCAGT
LOC_Os07g17550
OsAffx.16312.1.S1_at--944--4431Chr07:10371354..10371378 (25 bp)
GCCATTTCAGTGGTGTTGCATCAAA
LOC_Os07g17550
OsAffx.16312.1.S1_at--1058--1271Chr07:10371384..10371408 (25 bp)
AGATCATGGGCTGGCTTGGCATCTC
LOC_Os07g17550
OsAffx.16312.1.S1_at--1136--8271Chr07:10371401..10371425 (25 bp)
GGCATCTCCATGCTAAAACTTGGCA
LOC_Os07g17550
Target Sequence 
GAGACCTTGCTGCTGGAACACATATATGGCTTCCATTGTGTCCGAATCAGCTCCCCAAGGCTTAGAGCATCGCGAAATAG
TGGATATTCGGTGGCTAACGAAAGTGCAAACCCTGGATGCCCCTTGTCGCAAATGATTGCTATATCTTGTCCGTGCCTAA
GCCATTTCAGTGGTGTTGCATCAAAGCTGGAGATCATGGGCTGGCTTGGCATCTCCATGCTAAAACTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis