Browse Element(s) Details


Os.50930.1.S1_at

Description gb:AK101228.1
DB_XREF= gi:32986437
TID=Os.50930.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031H05, full insert sequence.
FL= gb:AK101228.1 gb:AK059530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3034011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30290OsAffx.8923.1.S1_at3/115+17473470..17476156retrotransposon protein, putative, unclassified
LOC_Os05g30300Os.50390.1.S1_at1/115+17485093..17490634Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30310OsAffx.14884.1.S1_at11/115+17492548..17495940transposon protein, putative, unclassified
LOC_Os05g30310OsAffx.30056.1.S1_at2/115+17492548..17495940transposon protein, putative, unclassified
LOC_Os05g30320NANA5+17497726..17498171glucosidase like protein, putative, expressed
LOC_Os05g30329NANA5+17500106..17500442NA
LOC_Os05g30340Os.50930.1.S1_at11/115+17500276..17507069expressed protein
LOC_Os05g30350Os.11830.1.S1_at11/115+17513995..17519526Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30360Os.47463.1.S1_x_at5/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30360Os.14491.2.S1_x_at4/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30370NANA5+17524650..17525681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30380NANA5+17529028..17532279transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50930.1.S1_at--90--1511Chr05:17506130..17506154 (25 bp)
AGCACCATGAGCTTATTGTCGGCTG
LOC_Os05g30340
Os.50930.1.S1_at--570--10231Chr05:17506143..17506167 (25 bp)
TATTGTCGGCTGAAGTTCCACATCA
LOC_Os05g30340
Os.50930.1.S1_at--247--10771Chr05:17506620..17506644 (25 bp)
TTGAGGTGATCAGCCATCCATGCAA
LOC_Os05g30340
Os.50930.1.S1_at--397--2671Chr05:17506643..17506667 (25 bp)
AAGCGCCTAAGGGTATCGGTCAAGA
LOC_Os05g30340
Os.50930.1.S1_at--246--7811Chr05:17506757..17506781 (25 bp)
GGTCTCCAGGCAGCGTTTTTTAAGC
LOC_Os05g30340
Os.50930.1.S1_at--274--10351Chr05:17506774..17506798 (25 bp)
TTTTAAGCCCGGCTACACAGGCAAG
LOC_Os05g30340
Os.50930.1.S1_at--928--11Chr05:17506820..17506844 (25 bp)
ATTCAAAGACGAGGCGGTTCATCCG
LOC_Os05g30340
Os.50930.1.S1_at--1025--10831Chr05:17506861..17506885 (25 bp)
TTGGATTTCCTCTCGTATTCGTAAA
LOC_Os05g30340
Os.50930.1.S1_at--975--8111Chr05:17506905..17506929 (25 bp)
GGACTAGCTACCTCAGACAATCGAT
LOC_Os05g30340
Os.50930.1.S1_at--261--3191Chr05:17506922..17506946 (25 bp)
CAATCGATCTTCCAGTTTAGCTTCT
LOC_Os05g30340
Os.50930.1.S1_at--556--6311Chr05:17506973..17506997 (25 bp)
GATGACGGCAACTGCAGTTCTTTTC
LOC_Os05g30340
Target Sequence 
AGCACCATGAGCTTATTGTCGGCTGAAGTTCCACATCAGATGGGAGAATTTCACCAGAGTTCTGAAGATGTATTGATTGA
CAATCAAGCAGCTGAGGAAGGGTATCAGAACTTTGAGGTGATCAGCCATCCATGCAAGCGCCTAAGGGTATCGGTCAAGA
GAGAAAGCGGGGCGCACTCCGAGGATGAGAGTGTTGCCCCCACAGTCTCTGTGAAGAAAGAAGCTCAGGAAGAAGCCACA
ACCAGCTTCGGTCTCCAGGCAGCGTTTTTTAAGCCCGGCTACACAGGCAAGCGGAGAAGGAGGATGCCTAAAATTCAAAG
ACGAGGCGGTTCATCCGCCTCTCCTTTTTCGTCTTGGATTTCCTCTCGTATTCGTAAAAAGCGGCAATTCTAAGGGGGGA
CTAGCTACCTCAGACAATCGATCTTCCAGTTTAGCTTCTGATCTGAACTTTTAGTTAGATGAGATGATGACGGCAACTGC
AGTTCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis