Browse Element(s) Details


Os.50948.1.S1_at

Description gb:AK059627.1
DB_XREF= gi:32969645
TID=Os.50948.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H11, full insert sequence.
FL= gb:AK059627.1 gb:AK065902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1223011/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12220OsAffx.17658.1.S1_at10/119+6927625..6928805hypothetical protein
LOC_Os09g12230Os.50948.1.S1_at11/119+6946873..6949913Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os09g12240OsAffx.6248.1.S1_at11/119+6951229..6957911Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os09g12250OsAffx.17660.1.S1_at11/119+6974494..6977083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50948.1.S1_at--1155--7671Chr09:6949609..6949633 (25 bp)
GGGTTAGCAGCTATCATTCTTGACA
LOC_Os09g12230
Os.50948.1.S1_at--124--131Chr09:6949624..6949648 (25 bp)
ATTCTTGACAACGTTGCACCTTGCA
LOC_Os09g12230
Os.50948.1.S1_at--373--7911Chr09:6949666..6949690 (25 bp)
GGTTGACTGTCATGTTAAGATCCAA
LOC_Os09g12230
Os.50948.1.S1_at--124--6371Chr09:6949684..6949708 (25 bp)
GATCCAAGATGGTTATGTCTCTCTG
LOC_Os09g12230
Os.50948.1.S1_at--343--771Chr09:6949698..6949722 (25 bp)
ATGTCTCTCTGAACTAATTGCCCGT
LOC_Os09g12230
Os.50948.1.S1_at--16--9751Chr09:6949712..6949736 (25 bp)
TAATTGCCCGTTTCTGTACAGTACT
LOC_Os09g12230
Os.50948.1.S1_at--582--4971Chr09:6949746..6949770 (25 bp)
GCATCATCTGTAAATCCCATGTTGA
LOC_Os09g12230
Os.50948.1.S1_at--133--6571Chr09:6949769..6949793 (25 bp)
GATTCACACTTTGGTTTATACCCTG
LOC_Os09g12230
Os.50948.1.S1_at--1028--10411Chr09:6949784..6949808 (25 bp)
TTATACCCTGAAGAGCGTGCGTGAT
LOC_Os09g12230
Os.50948.1.S1_at--517--5891Chr09:6949796..6949820 (25 bp)
GAGCGTGCGTGATCATGTCATTTGT
LOC_Os09g12230
Os.50948.1.S1_at--998--1651Chr09:6949843..6949867 (25 bp)
AGCCAGTCAGACTTGTATGCATCAA
LOC_Os09g12230
Target Sequence 
GGGTTAGCAGCTATCATTCTTGACAACGTTGCACCTTGCAAGAAATCGAGTCTAGTTGGTTGACTGTCATGTTAAGATCC
AAGATGGTTATGTCTCTCTGAACTAATTGCCCGTTTCTGTACAGTACTGTCAAAATTGCATCATCTGTAAATCCCATGTT
GATTCACACTTTGGTTTATACCCTGAAGAGCGTGCGTGATCATGTCATTTGTGATTATTGTAACCTTGTCAAGAAGCCAG
TCAGACTTGTATGCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis