Browse Element(s) Details


OsAffx.17660.1.S1_at

Description tigr:9637.m00943
TID=OsAffx.17660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1225011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12230Os.50948.1.S1_at11/119+6946873..6949913Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os09g12240OsAffx.6248.1.S1_at11/119+6951229..6957911Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os09g12250OsAffx.17660.1.S1_at11/119+6974494..6977083hypothetical protein
LOC_Os09g12260OsAffx.29813.1.S1_at11/119+6987163..6987744hypothetical protein
LOC_Os09g12270OsAffx.17661.1.S1_at11/119+6989893..6993385peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g12290Os.4417.1.S1_at11/119+6994060..7008477Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17660.1.S1_at--864--10211Chr09:6974529..6974553 (25 bp)
TATTGCTCGCGAAACGCTTGACAAT
LOC_Os09g12250
OsAffx.17660.1.S1_at--18--8571Chr09:6974558..6974582 (25 bp)
TGGATAATGACCACGGCCACTCATG
LOC_Os09g12250
OsAffx.17660.1.S1_at--527--9611Chr09:6974578..6974602 (25 bp)
TCATGCAATGTTAACGGCTTCCCAC
LOC_Os09g12250
OsAffx.17660.1.S1_at--202--5431Chr09:6974604..6974628 (25 bp)
GAAGCCAGACTCCAACAAGGGCCTG
LOC_Os09g12250
OsAffx.17660.1.S1_at--910--8371Chr09:6974662..6974681 (20 bp)
GGCGATAACCGCTCCGATAGAATAG
LOC_Os09g12250
OsAffx.17660.1.S1_at--685--10011Chr09:6975945..6975968 (24 bp)
TAGAATAGCCGCTCTTGTACCAAAC
LOC_Os09g12250
OsAffx.17660.1.S1_at--513--4811Chr09:6975974..6975998 (25 bp)
GCTCGGTCTCTTACTTGATGACGAC
LOC_Os09g12250
OsAffx.17660.1.S1_at--655--9631Chr09:6976131..6976155 (25 bp)
TCAGTTATCCTGAGTGCCAGACAGA
LOC_Os09g12250
OsAffx.17660.1.S1_at--751--251Chr09:6976644..6976668 (25 bp)
ATATGCTTCTCATACTTTCCAACGC
LOC_Os09g12250
OsAffx.17660.1.S1_at--176--10691Chr09:6976660..6976684 (25 bp)
TTCCAACGCCTATCCGATTGAAGTG
LOC_Os09g12250
OsAffx.17660.1.S1_at--48--7791Chr09:6976777..6976801 (25 bp)
GGTGCTAACGGCAGCTAGCTTGCAA
LOC_Os09g12250
Target Sequence 
TATTGCTCGCGAAACGCTTGACAATGAAGTGGATAATGACCACGGCCACTCATGCAATGTTAACGGCTTCCCACGGAAGC
CAGACTCCAACAAGGGCCTGCCATCGGAGGAGGAGGATGACGATGAGGGCAAGGGCGATAACCGCTCCGATAGAATAGCC
GCTCTTGTACCAAACCACGCGCTCGGTCTCTTACTTGATGACGACCATGACCGGCCGCTTCTGCACCATGACCCAAGACA
CCTAGTATGTATGGTTTTGCATTATGTTTTACATTATATCAGTTATCCTGAGTGCCAGACAGAAAAAACCAATGATGGTC
TTGATGATTACGATGATGTTGAACATATGCTTCTCATACTTTCCAACGCCTATCCGATTGAAGTGGGTGAAGCTCCTAAG
GTGCTAACGGCAGCTAGCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis