Browse Element(s) Details


OsAffx.29813.1.S1_at

Description tigr:9637.m00944
TID=OsAffx.29813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1226011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12250OsAffx.17660.1.S1_at11/119+6974494..6977083hypothetical protein
LOC_Os09g12260OsAffx.29813.1.S1_at11/119+6987163..6987744hypothetical protein
LOC_Os09g12270OsAffx.17661.1.S1_at11/119+6989893..6993385peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g12290Os.4417.1.S1_at11/119+6994060..7008477Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29813.1.S1_at--398--4131Chr09:6987620..6987644 (25 bp)
CGCGGCTACCGGAGGGTGGTGACGG
LOC_Os09g12260
OsAffx.29813.1.S1_at--835--3931Chr09:6987500..6987524 (25 bp)
CGGCGGATGGCAGCCGGTGTGGAGA
LOC_Os09g12260
OsAffx.29813.1.S1_at--84--2311Chr09:6987338..6987362 (25 bp)
AAAGGGCAGTGGTGGCGCAGAGGTT
LOC_Os09g12260
OsAffx.29813.1.S1_at--69--5431Chr09:6987297..6987321 (25 bp)
GAAGCCGGCGCAGGTGCGGAGAGTC
LOC_Os09g12260
OsAffx.29813.1.S1_at--1017--9131Chr09:6987283..6987307 (25 bp)
TGCGGAGAGTCGAGGCAGTGGCGCC
LOC_Os09g12260
OsAffx.29813.1.S1_at--773--5751Chr09:6987218..6987242 (25 bp)
GACGGTGGCGTCTACAGGCAATGTC
LOC_Os09g12260
OsAffx.29813.1.S1_at--142--1931Chr09:6987217..6987241 (25 bp)
ACGGTGGCGTCTACAGGCAATGTCA
LOC_Os09g12260
OsAffx.29813.1.S1_at--1101--7711Chr09:6987215..6987239 (25 bp)
GGTGGCGTCTACAGGCAATGTCAGT
LOC_Os09g12260
OsAffx.29813.1.S1_at--1147--7531Chr09:6987214..6987238 (25 bp)
GTGGCGTCTACAGGCAATGTCAGTG
LOC_Os09g12260
OsAffx.29813.1.S1_at--174--4651Chr09:6987211..6987235 (25 bp)
GCGTCTACAGGCAATGTCAGTGCGG
LOC_Os09g12260
OsAffx.29813.1.S1_at--710--9531Chr09:6987208..6987232 (25 bp)
TCTACAGGCAATGTCAGTGCGGAGG
LOC_Os09g12260
Target Sequence 
CGCGGCTACCGGAGGGTGGTGACGGCGGCGGCGGCGCGGAGAGTGGAGGAGGTGGCAGCGGCGGCTCCCCTCCCTCCCAG
ATCTGGTCGGAGGGGGAGGGGGGAGGGGGGAGGACGGCGGCGGCGGATGGCAGCCGGTGTGGAGAGTGGAGGGGGTGGCG
GTTCCCCTCCCTCCCAGATCTAGCCGAGGGGGGAGGGGGGAGGGCGGCGCCAGTGTCGAGGATGGAGGCGGTGATGGCGG
CGGCTCGCCTCCCTCCTAGATCTGGCCGAAGGGGGGGAGGGGAAAGGGCAGTGGTGGCGCAGAGGTTGTGGAGGAGGGCG
GCGGAAGCCGGCGCAGGTGCGGAGAGTCGAGGCAGTGGCGCCGGTGGCTCCCCTCCCTCCCAGATCTGGCCGGAGAGGGG
AGGACGGTGGCGTCTACAGGCAATGTCAGTGCGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis