Browse Element(s) Details


Os.4417.1.S1_at

Description gb:D78573.1
DB_XREF= gi:1107460
TID=Os.4417.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.4417 (NCBI UniGene Cluster)
DEF=Rice mRNA for aspartate kinase-homoserine dehydrogenase, complete cds.
PROD=aspartate kinase-homoserine dehydrogenase
FL= gb:AK068391.1 gb:D78573.1 gb:AK066685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1229011/11Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12250OsAffx.17660.1.S1_at11/119+6974494..6977083hypothetical protein
LOC_Os09g12260OsAffx.29813.1.S1_at11/119+6987163..6987744hypothetical protein
LOC_Os09g12270OsAffx.17661.1.S1_at11/119+6989893..6993385peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g12290Os.4417.1.S1_at11/119+6994060..7008477Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os09g12300OsAffx.29815.1.S1_x_at2/119+7014998..7015707serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g12310Os.54989.1.S1_at8/119+7016861..7019880Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os09g12320NANA9+7022340..7025162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12330OsAffx.20387.1.S1_x_at2/119+7025975..7030101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12340NANA9+7033461..7034795retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004072molecular_functionaspartate kinase activity
GO:0004412molecular_functionhomoserine dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4417.1.S1_at--1084--6131Chr09:6994504..6994528 (25 bp)
GAGGTACAAGAGAGACCACCCCTTC
LOC_Os09g12290
Os.4417.1.S1_at--566--4431Chr09:6994449..6994473 (25 bp)
GCCTTCACCACGTCGAGGTACAAGG
LOC_Os09g12290
Os.4417.1.S1_at--9--8651Chr09:6994334..6994358 (25 bp)
TGGGAGCACCCTCCTAGGCTTTAAC
LOC_Os09g12290
Os.4417.1.S1_at--143--10091Chr09:6994320..6994344 (25 bp)
TAGGCTTTAACCTTGAGCGTCCTGC
LOC_Os09g12290
Os.4417.1.S1_at--634--9251Chr09:6994301..6994325 (25 bp)
TCCTGCCTTCCTCGACAAAAATTGT
LOC_Os09g12290
Os.4417.1.S1_at--140--8891Chr09:6994265..6994289 (25 bp)
TGAGGCGTATTGATTGTGCCCGACT
LOC_Os09g12290
Os.4417.1.S1_at--675--7291Chr09:6994250..6994274 (25 bp)
GTGCCCGACTGGTTATTACATCATA
LOC_Os09g12290
Os.4417.1.S1_at--986--6131Chr09:6994161..6994185 (25 bp)
GAGGTGCTAGATGGTCCTTGGATCA
LOC_Os09g12290
Os.4417.1.S1_at--317--7751Chr09:6994136..6994160 (25 bp)
GGTGTTGTTTTTGCCACACAATCCA
LOC_Os09g12290
Os.4417.1.S1_at--818--3031Chr09:6994117..6994141 (25 bp)
AATCCAGAGCCGCTTGCTATCGAAC
LOC_Os09g12290
Os.4417.1.S1_at--1077--9071Chr09:6994103..6994127 (25 bp)
TGCTATCGAACTGCCACATTGTATT
LOC_Os09g12290
Target Sequence 
GAGGTACAAGAGAGACCACCCCTTCGCGCAGCTGTCCGGCTCCGACAACATCATCGCCTTCACCACGTCGAGGTACAAGG
AGCAGCCGCTGATCGTGCGAGGCCCCGGCGCCGGCGCGGAGGTCACCGCCGGTGGCGTCTTCTGCGACATCCTGCGGCTG
GCGTCCTACCTGGGAGCACCCTCCTAGGCTTTAACCTTGAGCGTCCTGCCTTCCTCGACAAAAATTGTCTGGAGGAAGAT
GAGGCGTATTGATTGTGCCCGACTGGTTATTACATCATATATGGGACTGGTAGTATGCAGTATGTATGTTGTTTCTGAAT
AAGTGCGAGGAAATAAGGTCTTAGAGGTGCTAGATGGTCCTTGGATCAGGTGTTGTTTTTGCCACACAATCCAGAGCCGC
TTGCTATCGAACTGCCACATTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis