Browse Element(s) Details


Os.54989.1.S1_at

Description gb:AK107258.1
DB_XREF= gi:32992467
TID=Os.54989.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G10, full insert sequence.
FL= gb:AK107258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g123108/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12270OsAffx.17661.1.S1_at11/119+6989893..6993385peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g12290Os.4417.1.S1_at11/119+6994060..7008477Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os09g12300OsAffx.29815.1.S1_x_at2/119+7014998..7015707serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g12310Os.54989.1.S1_at8/119+7016861..7019880Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os09g12320NANA9+7022340..7025162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12330OsAffx.20387.1.S1_x_at2/119+7025975..7030101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12340NANA9+7033461..7034795retrotransposon protein, putative, unclassified
LOC_Os09g12350OsAffx.6249.1.S1_at11/119+7044390..7053384hypothetical protein
LOC_Os09g12350Os.12366.1.S1_a_at1/119+7044390..7053384hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54989.1.S1_at--187--671Chr09:7017504..7017528 (25 bp)
ATGAATCGACATTTCTCCTATCCTG
LOC_Os09g12310
Os.54989.1.S1_at--1136--2591NONE
AACGCTGTATTCTCTTCGGAATCCA
NONE
Os.54989.1.S1_at--1143--8171Chr09:7017144..7017480 (25 bp)
GGAATCCACCGAAGCATTTTGAAGA
LOC_Os09g12310
Os.54989.1.S1_at--788--5351Chr09:7017124..7017148 (25 bp)
GAAGACTTCGCAAGGGTTCATTTTT
LOC_Os09g12310
Os.54989.1.S1_at--735--6731Chr09:7017109..7017133 (25 bp)
GTTCATTTTTGCAAGTACGGGCGCA
LOC_Os09g12310
Os.54989.1.S1_at--1057--9911Chr09:7017094..7017118 (25 bp)
TACGGGCGCAATATCCTCGTAGGAT
LOC_Os09g12310
Os.54989.1.S1_at--430--2691Chr09:7016993..7017017 (25 bp)
AAGCTGCTCAGCGAACTTCAAAGGC
LOC_Os09g12310
Os.54989.1.S1_at--422--5191Chr09:7016935..7016959 (25 bp)
GAATTTACCCGGATAGGAGTTCATT
LOC_Os09g12310
Os.54989.1.S1_at--520--4871NONE
GCTATGAATTCCAGCCTCAGAGGGT
NONE
Os.54989.1.S1_at--485--5251Chr09:7016885..7016909 (25 bp)
GAATCCTGGGTCTACCAGAGCCAAG
LOC_Os09g12310
Os.54989.1.S1_at--391--10051Chr09:7016768..7016792 (25 bp)
TAGTTGTTGGTGCTATCCTCAGAAA
NONE
Target Sequence 
ATGAATCGACATTTCTCCTATCCTGCAGAACAACGCTGTATTCTCTTCGGAATCCACCGAAGCATTTTGAAGACTTCGCA
AGGGTTCATTTTTGCAAGTACGGGCGCAATATCCTCGTAGGATGCAAGGCCTACATGAATGGTGCCCAAGTTGGATGCCT
TGCAGGAAACGGAGTGCAGGATGTTGATGAAGGCGACAAAAGCTGCTCAGCGAACTTCAAAGGCTCCTTGAAGACGTTAT
TTGATGAACTCATCAAGGAATTTACCCGGATAGGAGTTCATTGCTATGAATTCCAGCCTCAGAGGGTGAATCCTGGGTCT
ACCAGAGCCAAGGCGGACACCACATTGAGGCTATGATAATAGTAACGATAGGTGGTCAACATGAGGTTGACAATTTTTTT
TTTGTTTCTTGGGGATCAGAGATATAGTTGTTGGTGCTATCCTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis