Browse Element(s) Details


OsAffx.6249.1.S1_at

Description tigr:9637.m00955
TID=OsAffx.6249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1235011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12310Os.54989.1.S1_at8/119+7016861..7019880Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os09g12320NANA9+7022340..7025162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12330OsAffx.20387.1.S1_x_at2/119+7025975..7030101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12340NANA9+7033461..7034795retrotransposon protein, putative, unclassified
LOC_Os09g12350OsAffx.6249.1.S1_at11/119+7044390..7053384hypothetical protein
LOC_Os09g12350Os.12366.1.S1_a_at1/119+7044390..7053384hypothetical protein
LOC_Os09g12360NANA9+7064368..7065024hypothetical protein
LOC_Os09g12370NANA9+7068308..7070423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12380Os.54778.1.S1_at10/119+7076214..7077851No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6249.1.S1_at--492--2771Chr09:7052810..7052834 (25 bp)
AAGACGCAGCTCAGAACCTGACCAT
LOC_Os09g12350
OsAffx.6249.1.S1_at--319--2591Chr09:7052871..7052895 (25 bp)
AACGTTCACGATGCCCGGAGGCTAC
LOC_Os09g12350
OsAffx.6249.1.S1_at--223--8011Chr09:7053005..7053029 (25 bp)
GGATGGCCACCTTCAGCCTGATGTA
LOC_Os09g12350
OsAffx.6249.1.S1_at--699--1651Chr09:7053065..7053089 (25 bp)
AGCGCTGCGTGAAGCTCTCCATGGG
LOC_Os09g12350
OsAffx.6249.1.S1_at--504--3851Chr09:7053094..7053118 (25 bp)
CTGCACAGCAGCGTCAGGTCCGTGG
LOC_Os09g12350
OsAffx.6249.1.S1_at--361--3831Chr09:7053197..7053221 (25 bp)
CTGCCGTTGGTCTGGTCTACATAAA
LOC_Os09g12350
OsAffx.6249.1.S1_at--272--3131Chr09:7053220..7053244 (25 bp)
AATTTCGAGGTTTGGATGCTTGGCT
LOC_Os09g12350
OsAffx.6249.1.S1_at--1108--631Chr09:7053235..7053259 (25 bp)
ATGCTTGGCTGGATGACGCTCGCGC
LOC_Os09g12350
OsAffx.6249.1.S1_at--375--151Chr09:7053277..7053301 (25 bp)
ATTTTGGCGGCGCTAATCGTCGGCC
LOC_Os09g12350
OsAffx.6249.1.S1_at--280--9331Chr09:7053311..7053335 (25 bp)
TCGCGGTGGCGTTTTGGTTTTCTTG
LOC_Os09g12350
OsAffx.6249.1.S1_at--560--6811Chr09:7053327..7053351 (25 bp)
GTTTTCTTGGCCCTTTGCAGTAATC
LOC_Os09g12350
Target Sequence 
AAGACGCAGCTCAGAACCTGACCATCGGCGCGGTGCTCATCGTCACCGTGACCTTCGCCGCAACGTTCACGATGCCCGGA
GGCTACGTATCCTCCTCCGACGACGACGGCGAACGCCGCGGAACGCCGACCTTGGCCGGCACCTGCGCCTTCGACGCGTT
CGTCGTCGCCAACACGCTCGCCTTCATGCTCTCCGGGATGGCCACCTTCAGCCTGATGTACGCCGGCTACACGCCGCTCG
ACTTCGCCTTCCGCGAGCGCTGCGTGAAGCTCTCCATGGGCCTCCTGCACAGCAGCGTCAGGTCCGTGGGCGCCGCCTTC
CTGACGGCGACGTACGTGATGCTGGCACGGGTCGCCCCTAAGCTCGTCATCGCTGTCTACGCCGCCGCTGCCGTTGGTCT
GGTCTACATAAATTTCGAGGTTTGGATGCTTGGCTGGATGACGCTCGCGCTGCTGTCTAGAGGGGACATTTTGGCGGCGC
TAATCGTCGGCCTGCAAACCGTCGCGGTGGCGTTTTGGTTTTCTTGGCCCTTTGCAGTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis