Browse Element(s) Details


Os.12366.1.S1_a_at

Description gb:AK104123.1
DB_XREF= gi:32989332
TID=Os.12366.1
CNT=128
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12366 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for gamma-Tip, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C12, full insert sequence.
FL= gb:AK058322.1 gb:D25534.1 gb:AK068986.1 gb:AK059438.1 gb:AK104123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0529011/11aquaporin TIP-type, putative, expressed
LOC_Os09g123501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein
LOC_Os03g05260Os.23316.1.A1_at10/113+2522726..2525428Tankyrase 1, putative, expressed
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05320Os.14245.1.S1_s_at11/113+2560314..2562693expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009740biological_processgibberellic acid mediated signaling
GO:0018987biological_processosmoregulation
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0015200molecular_functionmethylammonium transporter activity
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12366.1.S1_a_at--636--8931Chr03:2542488..2542512 (25 bp)
TGACCGGCGTCTCCGTGTGGGAGGC
LOC_Os03g05290
Os.12366.1.S1_a_at--591--4211Chr03:2542410..2542434 (25 bp)
CCGCCGTTGACCCCAAGAAGGGCAG
LOC_Os03g05290
Os.12366.1.S1_a_at--176--1711Chr03:2542153..2542177 (25 bp)
ACCACCGACTACTAAGCTCATCGCC
LOC_Os03g05290
Os.12366.1.S1_a_at--28--9271Chr03:2542097..2542121 (25 bp)
TCCGACTCCGATCCAACCGTTTAGT
LOC_Os03g05290
Os.12366.1.S1_a_at--839--6351Chr03:2542088..2542112 (25 bp)
GATCCAACCGTTTAGTTTCTCGCAT
LOC_Os03g05290
Os.12366.1.S1_a_at--218--2631Chr03:2542083..2542107 (25 bp)
AACCGTTTAGTTTCTCGCATCAGTG
LOC_Os03g05290
Os.12366.1.S1_a_at--354--4031Chr03:2542080..2542104 (25 bp)
CGTTTAGTTTCTCGCATCAGTGCAT
LOC_Os03g05290
Os.12366.1.S1_a_at--460--10052Chr09:7047585..7047713 (24 bp)
TAGTTTCTCGCATCAGTGCATCATC
LOC_Os09g12350
Os.12366.1.S1_a_at--932--6831Chr03:2542074..2542098 (25 bp)
GTTTCTCGCATCAGTGCATCATCAA
LOC_Os03g05290
Os.12366.1.S1_a_at--1101--10571Chr03:2542072..2542096 (25 bp)
TTCTCGCATCAGTGCATCATCAAAC
LOC_Os03g05290
Os.12366.1.S1_a_at--136--2011Chr03:2542028..2542052 (25 bp)
CAGTTGTACGTTGAACGTACTGTAA
LOC_Os03g05290
Target Sequence 
TGACCGGCGTCTCCGTGTGGGAGGCCCTGGTGCTGGAGATCGTCATGACCTTCGGCCTCGTCTACACCGTGTACGCCACC
GCCGTTGACCCCAAGAAGGGCAGCCTCGGCACCATCGCCCCCATCGCCATCGGCTTCATCGTCGGCGCGAACATCCTCGT
CGGCGGCGCGTTCGACGGCGCCTCCATGAACCCGGCCGTCTCCTTCGGCCCGGCCCTCGTCAGCTGGTCCTGGGAGTCCC
AGTGGGTGTACTGGGTTGGCCCACTCATCGGCGGTGGCCTCGCCGGCGTCATCTACGAGGTCCTCTTCATCTCCCACACC
CACGAGCAGCTCCCCACCACCGACTACTAAGCTCATCGCCGCCGCCGCCGCTTGTCCATGATCGCCTCGTCTCCGACTCC
GATCCAACCGTTTAGTTTCTCGCATCAGTGCATCATCAAACCTGTTTCATTTGCTTGGATCAGTTGTACGTTGAACGTAC
TGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12366.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis