Browse Element(s) Details


Os.23316.1.A1_at

Description gb:AK065520.1
DB_XREF= gi:32975538
TID=Os.23316.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026K01, full insert sequence.
FL= gb:AK065520.1 gb:AK062087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0526010/11Tankyrase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein
LOC_Os03g05230Os.23314.1.S1_at4/113+2513273..2514656expressed protein
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein
LOC_Os03g05260Os.23316.1.A1_at10/113+2522726..2525428Tankyrase 1, putative, expressed
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23316.1.A1_at--906--4591Chr03:2523350..2523374 (25 bp)
GCGAACATTGATGGCTGCGTAACAA
LOC_Os03g05260
Os.23316.1.A1_at--663--10831Chr03:2523160..2523184 (25 bp)
TTGTGGATCTCTTGCTTAAAGCTGG
LOC_Os03g05260
Os.23316.1.A1_at--1039--8051Chr03:2523120..2523144 (25 bp)
GGAGAATACTTATGGCCAGGTCCCT
LOC_Os03g05260
Os.23316.1.A1_at--1155--2911Chr03:2523079..2523103 (25 bp)
AAGGCACTGAAGTCCGGAAACTGTT
LOC_Os03g05260
Os.23316.1.A1_at--707--6651Chr03:2523041..2523065 (25 bp)
GTTGAGGCCAGCACACATACTAGCA
LOC_Os03g05260
Os.23316.1.A1_at--1028--8151Chr03:2522920..2522944 (25 bp)
GGAAACATCGGCAAACCATCCATCA
LOC_Os03g05260
Os.23316.1.A1_at--359--9191Chr03:2522861..2522885 (25 bp)
TGCCTCTATCTTTCTATTTCGTATG
LOC_Os03g05260
Os.23316.1.A1_at--482--10311Chr03:2522845..2522869 (25 bp)
TTTCGTATGTTTGGGCTTGCTTGAT
LOC_Os03g05260
Os.23316.1.A1_at--600--1291Chr03:2522778..2522802 (25 bp)
AGATCCATGACGACCTGGGAGCATT
LOC_Os03g05260
Os.23316.1.A1_at--792--10851Chr03:2522751..2522775 (25 bp)
TTGGTATGTGTATCCTGCCATGTCA
LOC_Os03g05260
Os.23316.1.A1_at--1134--6931Chr03:2522723..2522745 (23 bp)
GTAGTCACTGTACCATCCTCAAAAA
NONE
Target Sequence 
GCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTNTGAAGGCGACACTCCACTCCATCATGCTGCCAG
AGGGNAACATCTGGGTNTTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCC
CTGCTGAGATGGCTGATGAAGGCACTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGC
AATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAA
CTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTNTTGGCTTGTTGCCATCTGCC
TCTATCTTTCTATTTCGTATGTTTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATA
GATCCATGACGACCTGGGAGCATTGATTGGTATGTGTATCCTGCCATGTCAGGAAGGTAGTCACTGTACCATCCTCAAAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23316.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis