Browse Element(s) Details


Os.33755.1.S1_at

Description gb:AK061250.1
DB_XREF= gi:32971268
TID=Os.33755.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F09, full insert sequence.
FL= gb:AK061250.1 gb:AK099130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g052809/11Ras family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein
LOC_Os03g05230Os.23314.1.S1_at4/113+2513273..2514656expressed protein
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein
LOC_Os03g05260Os.23316.1.A1_at10/113+2522726..2525428Tankyrase 1, putative, expressed
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05320Os.14245.1.S1_s_at11/113+2560314..2562693expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33755.1.S1_at--604--6571Chr03:2537785..2537809 (25 bp)
GATTCTTGAGGTACCAAGTCTCTTG
LOC_Os03g05280
Os.33755.1.S1_at--1018--6331Chr03:2537880..2537904 (25 bp)
GATGCTGTCAGTAGTTCCGGTTGCT
LOC_Os03g05280
Os.33755.1.S1_at--10--6711Chr03:2537893..2537917 (25 bp)
GTTCCGGTTGCTGTATGCGAGCTCA
LOC_Os03g05280
Os.33755.1.S1_at--203--9111Chr03:2537908..2537932 (25 bp)
TGCGAGCTCATGATGCTTAGACCTA
LOC_Os03g05280
Os.33755.1.S1_at--829--4891Chr03:2537922..2537946 (25 bp)
GCTTAGACCTAGCATGTTCTTGTGT
LOC_Os03g05280
Os.33755.1.S1_at--803--2151Chr03:2538015..2538039 (25 bp)
ACACGAAGTTTTTGGTGCGAACACT
LOC_Os03g05280
Os.33755.1.S1_at--805--3631Chr03:2538080..2538104 (25 bp)
CTTCCTTCAGGTAGCAGTTTGGTGT
LOC_Os03g05280
Os.33755.1.S1_at--446--7211Chr03:2538125..2538149 (25 bp)
GTCGACTAGTCTTGTTTTCTGGAAA
LOC_Os03g05280
Os.33755.1.S1_at--329--7071Chr03:2538157..2538181 (25 bp)
GTAATGGGATCCTGACAATTTGTCT
LOC_Os03g05280
Os.33755.1.S1_at--226--5931NONE
GAGCATCTGGTGGAAGTGTCATTAA
NONE
Os.33755.1.S1_at--650--4791Chr03:2538313..2538337 (25 bp)
GCTCTGTGACACTCTGTTAAACTGA
NONE
Target Sequence 
GATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACA
AAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGT
GTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTT
TTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGT
GCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGC
ATATGGTGGAAGTATATATCTGGTGCATAATTCTGAATGATCTGTGTACAAAAGAAAAGGCGTATATCAGGAGCATCTGG
TGGAAGTGTCATTAACTTATCATGCAGGTAACAATTATTATCAACGAAGCTCTGTGACACTCTGTTAAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis