Browse Element(s) Details


OsAffx.24976.1.S1_at

Description tigr:9631.m00445
TID=OsAffx.24976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0525010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein
LOC_Os03g05230Os.23314.1.S1_at4/113+2513273..2514656expressed protein
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein
LOC_Os03g05260Os.23316.1.A1_at10/113+2522726..2525428Tankyrase 1, putative, expressed
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24976.1.S1_at--209--231Chr03:2522116..2522140 (25 bp)
ATATTCTCTGCTACGACGAGGTCAA
LOC_Os03g05250
OsAffx.24976.1.S1_at--134--4651NONE
GCGTCCGGCGAGGTACCTAGTACTG
NONE
OsAffx.24976.1.S1_at--252--3291Chr03:2520504..2520528 (25 bp)
CAAAGCTCAATGCTGATACTTCTGA
LOC_Os03g05250
OsAffx.24976.1.S1_at--1049--2971Chr03:2520424..2520448 (25 bp)
AATGGGTCGATGAAAATCCCGCGAG
LOC_Os03g05250
OsAffx.24976.1.S1_at--780--2271Chr03:2520411..2520435 (25 bp)
AAATCCCGCGAGTATGGCTGTCTTT
LOC_Os03g05250
OsAffx.24976.1.S1_at--32--4731Chr03:2520395..2520419 (25 bp)
GCTGTCTTTGTCTGATTGCTGGGAG
LOC_Os03g05250
OsAffx.24976.1.S1_at--1069--6191Chr03:2520319..2520343 (25 bp)
GAGGCAATCTATACTGTGTACAGCT
LOC_Os03g05250
OsAffx.24976.1.S1_at--157--7451Chr03:2520304..2520328 (25 bp)
GTGTACAGCTATATCGCTATTGGGA
LOC_Os03g05250
OsAffx.24976.1.S1_at--25--10831Chr03:2520285..2520309 (25 bp)
TTGGGATTATCCTGAGCCTTAACTG
LOC_Os03g05250
OsAffx.24976.1.S1_at--1046--5851Chr03:2520272..2520296 (25 bp)
GAGCCTTAACTGTTTCTGGAAAGTA
LOC_Os03g05250
OsAffx.24976.1.S1_at--432--3671Chr03:2520201..2520225 (25 bp)
CTTTCTTTATTACCATCGTTTGCAT
LOC_Os03g05250
Target Sequence 
ATATTCTCTGCTACGACGAGGTCAAGACGATATCCATCAGGTCGCGCGGCGTCGTCTTCACCGGAGATGCGTCCGGCGAG
GTACCTAGTACTGGAGTTATGTTTGCAAAGCTCAATGCTGATACTTCTGAGATTAAGCTTACTGAGAAACAGGATGATGA
TACTGAAGACGACAAGAAGAAAGTCAATGGGTCGATGAAAATCCCGCGAGTATGGCTGTCTTTGTCTGATTGCTGGGAGA
AAATGAAGGTCTCTATCTTTGAGTTTATGATTGATACAAGTGGAAAGAAAGAGGCAATCTATACTGTGTACAGCTATATC
GCTATTGGGATTATCCTGAGCCTTAACTGTTTCTGGAAAGTATGGCGTGAAGCTAGTAATTCGGATGAAAAACCATCTGG
GTTTAAAGCTTTCTTTATTACCATCGTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis