Browse Element(s) Details


OsAffx.12738.1.S1_at

Description tigr:9631.m00447
TID=OsAffx.12738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0527011/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein
LOC_Os03g05230Os.23314.1.S1_at4/113+2513273..2514656expressed protein
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein
LOC_Os03g05260Os.23316.1.A1_at10/113+2522726..2525428Tankyrase 1, putative, expressed
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12738.1.S1_at--468--2251Chr03:2531160..2531184 (25 bp)
AAATTCAGTTACTTGTGTTCTTCAG
LOC_Os03g05270
OsAffx.12738.1.S1_at--450--9651Chr03:2531164..2531188 (25 bp)
TCAGTTACTTGTGTTCTTCAGTCCA
LOC_Os03g05270
OsAffx.12738.1.S1_at--14--10491Chr03:2531168..2531192 (25 bp)
TTACTTGTGTTCTTCAGTCCAACCA
LOC_Os03g05270
OsAffx.12738.1.S1_at--322--2071Chr03:2531170..2531194 (25 bp)
ACTTGTGTTCTTCAGTCCAACCAGG
LOC_Os03g05270
OsAffx.12738.1.S1_at--625--8651Chr03:2531173..2531197 (25 bp)
TGTGTTCTTCAGTCCAACCAGGTAA
LOC_Os03g05270
OsAffx.12738.1.S1_at--807--6711Chr03:2531176..2531200 (25 bp)
GTTCTTCAGTCCAACCAGGTAACTA
LOC_Os03g05270
OsAffx.12738.1.S1_at--1151--1131Chr03:2531183..2531207 (25 bp)
AGTCCAACCAGGTAACTATACGCTG
LOC_Os03g05270
OsAffx.12738.1.S1_at--773--2611Chr03:2531188..2531212 (25 bp)
AACCAGGTAACTATACGCTGAACAA
LOC_Os03g05270
OsAffx.12738.1.S1_at--1075--2011Chr03:2531197..2531221 (25 bp)
ACTATACGCTGAACAAAAGTTTTTG
LOC_Os03g05270
OsAffx.12738.1.S1_at--297--10831Chr03:2531219..2531243 (25 bp)
TTGTGGTTTTTTTGGCTCTGTCAGA
LOC_Os03g05270
OsAffx.12738.1.S1_at--578--7871Chr03:2531223..2531247 (25 bp)
GGTTTTTTTGGCTCTGTCAGATATG
LOC_Os03g05270
Target Sequence 
AAATTCAGTTACTTGTGTTCTTCAGTCCAACCAGGTAACTATACGCTGAACAAAAGTTTTTGTGGTTTTTTTGGCTCTGT
CAGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis