Browse Element(s) Details


Os.16119.1.S1_at

Description gb:AK111974.1
DB_XREF= gi:37988637
TID=Os.16119.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.16119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D01, full insert sequence.
FL= gb:AK120554.1 gb:AK111974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0531011/11Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05320Os.14245.1.S1_s_at11/113+2560314..2562693expressed protein
LOC_Os03g05330Os.27179.1.S1_at11/113+2576121..2584586HEAT repeat family protein, expressed
LOC_Os03g05330OsAffx.24977.1.S1_x_at11/113+2576121..2584586HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015995biological_processchlorophyll biosynthesis
GO:0015996biological_processchlorophyll catabolism
GO:0009507cellular_componentchloroplast
GO:0009055molecular_functionelectron carrier activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0046407molecular_functionchlorophyll a oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16119.1.S1_at--32--2191Chr03:2558282..2558306 (25 bp)
ACACAAAGATCACGTTTACACCCAC
LOC_Os03g05310
Os.16119.1.S1_at--882--4991Chr03:2558307..2558331 (25 bp)
GCAGGCTGACCGTTTTGTTTTGGCA
LOC_Os03g05310
Os.16119.1.S1_at--666--8771Chr03:2558322..2558346 (25 bp)
TGTTTTGGCATTCCGGGCATGGCTA
LOC_Os03g05310
Os.16119.1.S1_at--526--7831Chr03:2558356..2558380 (25 bp)
GGTAACAGCCAACCTGACTGGTTTG
LOC_Os03g05310
Os.16119.1.S1_at--422--5731Chr03:2558371..2558395 (25 bp)
GACTGGTTTGGAAATCCTAGCCAAG
LOC_Os03g05310
Os.16119.1.S1_at--199--1691Chr03:2558389..2558413 (25 bp)
AGCCAAGAAGTGTTGCCTTCCACTG
LOC_Os03g05310
Os.16119.1.S1_at--850--331Chr03:2559127..2559151 (25 bp)
ATACAACGCCTTCCAGACTCTGCAA
LOC_Os03g05310
Os.16119.1.S1_at--670--2712Chr03:2559331..2559355 (25 bp)
AAGCATGACATCTGATCTGAGATCT
LOC_Os03g05310
Os.16119.1.S1_at--755--5411Chr03:2559359..2559383 (25 bp)
GAAGCGACATCACACGATCATTTGT
LOC_Os03g05310
Os.16119.1.S1_at--1153--6411Chr03:2559374..2559398 (25 bp)
GATCATTTGTGCAACGTAAGCTAGG
LOC_Os03g05310
Os.16119.1.S1_at--604--7071Chr03:2559453..2559477 (25 bp)
GTAATTTGTATTAGCTCTTCGGAGA
LOC_Os03g05310
Target Sequence 
ACACAAAGATCACGTTTACACCCACGCAGGCTGACCGTTTTGTTTTGGCATTCCGGGCATGGCTAAGGAAATTTGGTAAC
AGCCAACCTGACTGGTTTGGAAATCCTAGCCAAGAAGTGTTGCCTTCCACTGTCCTTTCAAAGCGTGAGATGCTAGATAG
ATATGAGCAGCACACACTGAAATGCTCATCTTGCAAAGGGGCATACAACGCCTTCCAGACTCTGCAAAAGGTCTTCATGG
GAGCGACAGTGGCGTTCTGTGCAACTGCTGGGATTCCTGCGGATGTTCAGTTCAGATTATTGCTTGCCGCTGCTGCTTTG
GTTAGTGCCGCTGTAGCGTACGCATTTTATACGCTCCAGAAGAATTTTGTATTTGTAGATTACGTGCATGCTGAGATTGA
TTAAACAAGCATGACATCTGATCTGAGATCTGGTGAAGCGACATCACACGATCATTTGTGCAACGTAAGCTAGGGAATAT
AGATTGTCGGTGGNTATAGTCTAATGTTGCATTGTAGGCAATAGGTTTGTAATTTGTATTAGCTCTTCGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis