Browse Element(s) Details


Os.18033.1.S1_at

Description gb:AK121395.1
DB_XREF= gi:37991018
TID=Os.18033.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023130M16, full insert sequence.
FL= gb:AY583319.1 gb:AK121395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g053002/11cyclin-dependent kinases regulatory subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed
LOC_Os03g05290Os.12366.1.S1_x_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05290Os.12366.1.S1_a_at11/113+2541920..2543757aquaporin TIP-type, putative, expressed
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05320Os.14245.1.S1_s_at11/113+2560314..2562693expressed protein
LOC_Os03g05330Os.27179.1.S1_at11/113+2576121..2584586HEAT repeat family protein, expressed
LOC_Os03g05330OsAffx.24977.1.S1_x_at11/113+2576121..2584586HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000278biological_processmitotic cell cycle
GO:0007049biological_processcell cycle
GO:0042023biological_processDNA endoreduplication
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18033.1.S1_at--826--5631Chr03:2551210..2551321 (25 bp)
GACACCTACGAGTACAGGCACGTCG
LOC_Os03g05300
Os.18033.1.S1_at--1092--10571Chr03:2551364..2551500 (25 bp)
TTCTCTCCGAGAACGAGTGGCGCGC
LOC_Os03g05300
Os.18033.1.S1_at--175--8391Chr03:2551624..2551648 (25 bp)
GGCGCAGATGCTGCCCAAGTGACTG
NONE
Os.18033.1.S1_at--588--6591Chr03:2551681..2551705 (25 bp)
GTTGAAATGTGCGAAACCCTAGCCC
NONE
Os.18033.1.S1_at--58--6711Chr03:2551726..2551750 (25 bp)
GTTCGCGATACTGCTAATTTACTTT
NONE
Os.18033.1.S1_at--659--10071Chr03:2551817..2551841 (25 bp)
TAGGAACTGGCATGTAAACGTCTGT
NONE
Os.18033.1.S1_at--36--2391Chr03:2551832..2551856 (25 bp)
AAACGTCTGTGTTATCTTGGATACT
NONE
Os.18033.1.S1_at--409--7951Chr03:2551850..2551874 (25 bp)
GGATACTTTTCATTGCTAAGCTATT
NONE
Os.18033.1.S1_at--895--2551Chr03:2551900..2551924 (25 bp)
AACTGTTACAACTTACTACTACTAT
NONE
Os.18033.1.S1_at--723--5671Chr03:2551929..2551953 (25 bp)
GACATTCTGATTGTGGTCATGCTTA
NONE
Os.18033.1.S1_at--485--3571Chr03:2551955..2551979 (25 bp)
CATTTCTTTCTTTTGTCCAGCATTC
NONE
Target Sequence 
GACACCTACGAGTACAGGCACGTCGTCCTTCCGCCGGAGGTCGCCAAGCTCCTCCCCAAGAATCGCCTTCTCTCCGAGAA
CGAGTGGCGCGCGATCGGAGTGCAGCAGAGCCGCGGGTGGGTGCACTACGCGATCCACCGGCCGGAGCCGCACATCATGC
TGTTCCGCCGCCCGCTCAACTTCCAGCAGCAGCAGGAGGCAGCCGCGGCTGCAGCGGCGCAGATGCTGCCCAAGTGACTG
CCCCCNTCCACGCGGCGATGGCGGCGACCCGGGGTTGAAATGTGCGAAACCCTAGCCCCTTTACATCTCTTAAAGGGGGT
TCGCGATACTGCTAATTTACTTTCGTTTGTTAGTTGGAAATCTTAGTGATGTTGGTGGTGTCCNCCTTGTGTTCGTGAGA
ATGCCCGAGTAGGAACTGGCATGTAAACGTCTGTGTTATCTTGGATACTTTTCATTGCTAAGCTATTATATGTGATGCTG
GTACTGTTGTTAAACTGTTACAACTTACTACTACTATATGTGACATTCTGATTGTGGTCATGCTTANCATTTCTTTCTTT
TGTCCAGCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis