Browse Element(s) Details


Os.16824.1.A1_at

Description gb:CA761576
DB_XREF= gi:25805615
DB_XREF=BR060011A10H05.ab1
CLONE=BR060011A10H05.ab1
TID=Os.16824.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16824 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g194949/11expressed protein
LOC_Os03g053101/11Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19444Os.25544.1.S1_at11/117+11495187..11503496regulatory protein, putative, expressed
LOC_Os07g19460Os.24751.1.S1_at8/117+11503911..11507933Mitochondrial carrier protein, expressed
LOC_Os07g19470Os.23552.1.S1_at11/117+11512208..11516466Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os07g19480NANA7+11525666..11526039hypothetical protein
LOC_Os07g19494Os.51082.1.S1_at11/117+11526306..11531984expressed protein
LOC_Os07g19494Os.16824.1.A1_at9/117+11526306..11531984expressed protein
LOC_Os07g19510NANA7+11533336..11539696retrotransposon protein, putative, unclassified
LOC_Os07g19520NANA7+11544775..11545269hypothetical protein
LOC_Os07g19530Os.25206.1.A1_s_at11/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.14681.1.A1_s_at10/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.25206.1.A1_x_at2/117+11549397..11568594Peptidase family M28 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015995biological_processchlorophyll biosynthesis
GO:0015996biological_processchlorophyll catabolism
GO:0009507cellular_componentchloroplast
GO:0005215molecular_functiontransporter activity
GO:0009055molecular_functionelectron carrier activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0046407molecular_functionchlorophyll a oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16824.1.A1_at--400--6931Chr07:11529919..11529943 (25 bp)
GTAGTCCTGACATCAATTCATTTTT
LOC_Os07g19494
Os.16824.1.A1_at--1116--171Chr07:11529938..11529962 (25 bp)
ATTTTTGCTCATTTGTGTGTGCAGC
LOC_Os07g19494
Os.16824.1.A1_at--1063--7471Chr07:11529952..11529976 (25 bp)
GTGTGTGCAGCATTATAGTTCTCAT
LOC_Os07g19494
Os.16824.1.A1_at--1065--2551NONE
AACTGGGCCGCTTTAAAGTGTCTGT
NONE
Os.16824.1.A1_at--511--1111Chr07:11530013..11530037 (25 bp)
AGTGTCTGTGCAATATCTTTACATT
LOC_Os07g19494
Os.16824.1.A1_at--318--491Chr03:2558770..2558789 (20 bp)
ATCTGTGTTTCTGTGCTATATTTTA
LOC_Os03g05310
Os.16824.1.A1_at--639--7991Chr07:11530155..11530179 (25 bp)
GGATGACTTCTTTATACCACATGCA
LOC_Os07g19494
Os.16824.1.A1_at--494--8051Chr07:11530196..11530280 (25 bp)
GGAGATAATCTATTGGCCGACTCTT
LOC_Os07g19494
Os.16824.1.A1_at--335--8411Chr07:11530270..11530294 (25 bp)
GGCCGACTCTTTTTGGTGGTTGCAC
LOC_Os07g19494
Os.16824.1.A1_at--725--7731Chr07:11530284..11530308 (25 bp)
GGTGGTTGCACTCCCTGGAGACATA
LOC_Os07g19494
Os.16824.1.A1_at--469--1251Chr07:11530348..11530372 (25 bp)
AGATTGTTGTCCGTTCCTGTTTTAT
LOC_Os07g19494
Target Sequence 
GTAGTCCTGACATCAATTCATTTTTGCTCATTTGTGTGTGCAGCATTATAGTTCTCATAAATCGTTTGATGGTGGTAAAA
CTGGGCCGCTTTAAAGTGTCTGTGCAATATCTTTACATTGAAGTTGGNCTNTNCANTGGTTTTTAAATTNGANANNCAAN
ATCTGTGTTTCTGTGCTATATTTTATTTTATAGGATGCTTGTAAAAACCTTTACCNAGATGAAAATATGGTGCTGTACTG
GATGACTTCTTTATACCACATGCAGATATGACGTGTGGTTGGAGATAAACCTATATTTTATAATTCAAATGACCNACNAT
TTATTTCCGCTACCANCAGTAGATTATCTCATAAAGGAGATAATCTATTGGCCGACTCTTTTTGGTGGTTGCACTCCCTG
GAGACATAAGATTGTACTTNGTATGCANTTTGTTGTATGTCNAGCCANTAGATTGTTGTCCGTTCCTGTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16824.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis