Browse Element(s) Details


Os.51082.1.S1_at

Description gb:AK060569.1
DB_XREF= gi:32970587
TID=Os.51082.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-C01, full insert sequence.
FL= gb:AK060569.1 gb:AK073103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1949411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19444Os.25544.1.S1_at11/117+11495187..11503496regulatory protein, putative, expressed
LOC_Os07g19460Os.24751.1.S1_at8/117+11503911..11507933Mitochondrial carrier protein, expressed
LOC_Os07g19470Os.23552.1.S1_at11/117+11512208..11516466Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os07g19480NANA7+11525666..11526039hypothetical protein
LOC_Os07g19494Os.51082.1.S1_at11/117+11526306..11531984expressed protein
LOC_Os07g19494Os.16824.1.A1_at9/117+11526306..11531984expressed protein
LOC_Os07g19510NANA7+11533336..11539696retrotransposon protein, putative, unclassified
LOC_Os07g19520NANA7+11544775..11545269hypothetical protein
LOC_Os07g19530Os.25206.1.A1_s_at11/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.14681.1.A1_s_at10/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.25206.1.A1_x_at2/117+11549397..11568594Peptidase family M28 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51082.1.S1_at--686--9671Chr07:11531465..11531489 (25 bp)
TACTTTCGGAAGACACGGACATGGC
LOC_Os07g19494
Os.51082.1.S1_at--375--351Chr07:11531560..11531584 (25 bp)
ATAAGCAGGAGATCCTTCTTTGGTC
LOC_Os07g19494
Os.51082.1.S1_at--866--2771Chr07:11531604..11531628 (25 bp)
AAGATGGCAGCCAAACGAACGTTTG
LOC_Os07g19494
Os.51082.1.S1_at--1078--8911Chr07:11531627..11531651 (25 bp)
TGACCTTAAACGTCTACCGTTGCAA
LOC_Os07g19494
Os.51082.1.S1_at--1150--1231Chr07:11531767..11531791 (25 bp)
AGTTGTGTAAACCACAGCCACCTGC
LOC_Os07g19494
Os.51082.1.S1_at--374--4831Chr07:11531790..11531814 (25 bp)
GCTAAGCCCTCTTAAATTCGTGAGT
LOC_Os07g19494
Os.51082.1.S1_at--541--6771Chr07:11531813..11531837 (25 bp)
GTTAGTCAGAGATCGATTGCCTGCA
LOC_Os07g19494
Os.51082.1.S1_at--483--6591Chr07:11531827..11531851 (25 bp)
GATTGCCTGCATGTAACACTTGTAT
LOC_Os07g19494
Os.51082.1.S1_at--496--691Chr07:11531874..11531898 (25 bp)
ATGAGCGTCTTTGCGGACTAGATCC
LOC_Os07g19494
Os.51082.1.S1_at--772--3951Chr07:11531931..11531955 (25 bp)
CGGAGCTTAGTTTGGTGATGTGCCC
LOC_Os07g19494
Os.51082.1.S1_at--919--7651Chr07:11531956..11531980 (25 bp)
GGGAGGCTGCATGCAAGGTTTCAAA
LOC_Os07g19494
Target Sequence 
TACTTTCGGAAGACACGGACATGGCAGAAGACAGTGTTGGGAGAAGGGCATTGAAGATGTATAACTAAACCAAATTCTTC
ATTCAATGCATTGACATAAGCAGGAGATCCTTCTTTGGTCAAGGGTTTAGAGTGTCGGAAAGATGGCAGCCAAACGAACG
TTTGACCTTAAACGTCTACCGTTGCAAACGACTAAACGAGAATTTGTTCTGTTTGGAAGGGCCATAGTGGAATTGGCGGT
TTGTGTTTTGGTGACGGCAAAAACAAGTCACCAGTGTGACAAAATCTGATGTTGGCTGTGGCAGTTGTGTAAACCACAGC
CACCTGCTAAGCCCTCTTAAATTCGTGAGTTAGTCAGAGATCGATTGCCTGCATGTAACACTTGTATAATGACATTTTAG
ATTATTTAGATGAGCGTCTTTGCGGACTAGATCCGATATATTGTCGCAGATTGTTGTAGGTTTAAACGGAGCTTAGTTTG
GTGATGTGCCCGGGAGGCTGCATGCAAGGTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis