Browse Element(s) Details


Os.25544.1.S1_at

Description gb:AK065831.1
DB_XREF= gi:32975849
TID=Os.25544.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G09.1 (P0446G09.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037A06, full insert sequence.
FL= gb:AK065831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1944411/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19390OsAffx.28522.1.S1_at1/117+11471598..11472551hypothetical protein
LOC_Os07g19400Os.24579.1.S1_at11/117+11477902..11480201pentatricopeptide, putative, expressed
LOC_Os07g19410Os.57125.1.S1_at10/117+11484120..11485507expressed protein
LOC_Os07g19420NANA7+11487286..11488683retrotransposon protein, putative, unclassified
LOC_Os07g19430NANA7+11489718..11490392retrotransposon protein, putative, unclassified
LOC_Os07g19444Os.25544.1.S1_at11/117+11495187..11503496regulatory protein, putative, expressed
LOC_Os07g19460Os.24751.1.S1_at8/117+11503911..11507933Mitochondrial carrier protein, expressed
LOC_Os07g19470Os.23552.1.S1_at11/117+11512208..11516466Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os07g19480NANA7+11525666..11526039hypothetical protein
LOC_Os07g19494Os.51082.1.S1_at11/117+11526306..11531984expressed protein
LOC_Os07g19494Os.16824.1.A1_at9/117+11526306..11531984expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25544.1.S1_at--745--1771Chr07:11502895..11502919 (25 bp)
ACCGGATCGTCAAGGAAGGCGTGCC
LOC_Os07g19444
Os.25544.1.S1_at--532--3211Chr07:11502986..11503010 (25 bp)
CAAGGACCTCGGCAGGGTTGTCACC
LOC_Os07g19444
Os.25544.1.S1_at--903--2551Chr07:11503020..11503044 (25 bp)
AACTGCTGCGTTGGGCTGCACAACA
LOC_Os07g19444
Os.25544.1.S1_at--746--3271Chr07:11503040..11503064 (25 bp)
CAACAAGCTCTTCGATCTGAGGAAT
LOC_Os07g19444
Os.25544.1.S1_at--792--10711Chr07:11503099..11503123 (25 bp)
TTGCTGCCGGGAACATGGACTACTT
LOC_Os07g19444
Os.25544.1.S1_at--275--10391Chr07:11503170..11503194 (25 bp)
TTTTCTCAGGGCTTGTGCGGTTAAT
LOC_Os07g19444
Os.25544.1.S1_at--4--10471Chr07:11503227..11503251 (25 bp)
TTAATTTCATACCTTATCTACCCCG
LOC_Os07g19444
Os.25544.1.S1_at--449--9891Chr07:11503241..11503265 (25 bp)
TATCTACCCCGATCATTTTCTTAAG
LOC_Os07g19444
Os.25544.1.S1_at--1024--5991Chr07:11503265..11503289 (25 bp)
GAGATCAACCGAATAAGCCCTAAAT
LOC_Os07g19444
Os.25544.1.S1_at--214--10071Chr07:11503364..11503388 (25 bp)
TAGTGGTAGCTTGTACATGATGCAT
LOC_Os07g19444
Os.25544.1.S1_at--889--6331Chr07:11503417..11503441 (25 bp)
GATGCATATGAGACATTCCCTATTT
LOC_Os07g19444
Target Sequence 
ACCGGATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGGCCACTTCGGCGGGTTN
TGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGCCAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGA
TCTGAGGAATGTGCTCGACGATTGGAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTNTCATGGAGGG
TGCCAGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCTCCCTCCTCTAAGAAAA
AATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTTTCTTAAGAGATCAACCGAATAAGCCCTAAATGAATT
TGAGTTGGGANANGANNNNAGGGGGGTGTNCCTGCATGTAAAGTGCTATTGAATTCAATTCTTTNTTATTAGTGGTAGCT
TGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTNTAAGATGCATATGAGACATTCCCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis