Browse Element(s) Details


OsAffx.28522.1.S1_at

Description gb:NM_188804.1
DB_XREF= gi:34904691
GEN=P0446G09.10
TID=OsAffx.28522.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0446G09.10 (P0446G09.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g193795/11
LOC_Os07g193901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19340NANA7+11443742..11444970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19350OsAffx.28521.2.S1_s_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19350OsAffx.28521.1.S1_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19360NANA7+11454139..11454667retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.45173.1.S1_x_at6/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.38764.1.S1_x_at1/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19379OsAffx.28522.1.S1_at5/117+11469227..11469625NA
LOC_Os07g19390OsAffx.28522.1.S1_at1/117+11471598..11472551hypothetical protein
LOC_Os07g19400Os.24579.1.S1_at11/117+11477902..11480201pentatricopeptide, putative, expressed
LOC_Os07g19410Os.57125.1.S1_at10/117+11484120..11485507expressed protein
LOC_Os07g19420NANA7+11487286..11488683retrotransposon protein, putative, unclassified
LOC_Os07g19430NANA7+11489718..11490392retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28522.1.S1_at--14--5891Chr07:11471659..11471683 (25 bp)
GAGCTAACAGAATTACCTACCACCG
LOC_Os07g19390
OsAffx.28522.1.S1_at--436--5611Chr07:11471412..11471436 (25 bp)
GACAAGGACGTGTCGTTTGAGCAGC
NONE
OsAffx.28522.1.S1_at--216--7591Chr07:11471390..11471409 (20 bp)
GGGCTTAACATGTCCACGGTCCTTC
NONE
OsAffx.28522.1.S1_at--254--10071Chr07:11470032..11470056 (25 bp)
TAGGGCCGCTGCTGAGTCGCACTGT
NONE
OsAffx.28522.1.S1_at--1114--10271Chr07:11469830..11469901 (25 bp)
TTTGCCGGTTGCTCCAGAGCTCATA
NONE
OsAffx.28522.1.S1_at--310--10151Chr07:11469778..11469802 (25 bp)
TATCCGTGCCGGTCACAGGTGTCAT
NONE
OsAffx.28522.1.S1_at--992--4671Chr07:11469585..11469609 (25 bp)
GCGGTAATCCTGGTCCACGGTGGAC
LOC_Os07g19379
OsAffx.28522.1.S1_at--932--3291Chr07:11469570..11469594 (25 bp)
CACGGTGGACCGAGCGTTGTGTCAC
LOC_Os07g19379
OsAffx.28522.1.S1_at--622--5871Chr07:11469564..11469583 (20 bp)
GAGCGTTGTGTCACCGACGGAATAC
LOC_Os07g19379
OsAffx.28522.1.S1_at--235--5231Chr07:11469277..11469301 (25 bp)
GAATACGACAGTTCCAATGCTCCCG
LOC_Os07g19379
OsAffx.28522.1.S1_at--1009--3011Chr07:11469262..11469286 (25 bp)
AATGCTCCCGTCTGTTACGAGGTGG
LOC_Os07g19379
Target Sequence 
GAGCTAACAGAATTACCTACCACCGCCTTACCGTNNTNNNCAANNANNNCNGNNNNCNANNNNNGNNGNNNNNGNNNNNN
NNCTNNTGCCGGTCAGTCATCGGCGTCGAGCAGCCGTTCCGGGTGATGCGGATGCCGGCGACGGCCGGCGCGAAGGAAGA
AGTGCGCGAGGACAAGGACGTGTCGTTTGAGCAGCTGGGGCTTAACATGTCCACGGTCCTTCGGCCGTCGCTAGCCATCG
CTAGGGCCGCTGCTGAGTCGCACTGTCGCCTCCACCGGGTCCGCAAGGTCGAGAGCTACCTCGACCGCCGTTCGCCCATC
GTCTTCTGCCGCTGGAACCCGCCTCCCCTCGGTTTGCCGGTTGCTCCAGAGCTCATATACCCCTTGCCGCCGTCGTTGCT
GTCCTATCCGTGCCGGTCACAGGTGTCATCGGCCATCTCGTCCCGAGCCGCGCCCCTGTCCCAATGGCGGTGGACCGCCG
CGGTAATCCTGGTCCACGGTGGACCGAGCGTTGTGTCACCGACGGAATACGACAGTTCCAATGCTCCCGTCTGTTACGAG
GTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis