Browse Element(s) Details


Os.24579.1.S1_at

Description gb:AK108740.1
DB_XREF= gi:32993949
TID=Os.24579.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G09.7 (P0446G09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-E03, full insert sequence.
FL= gb:AK108740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1940011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19360NANA7+11454139..11454667retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.45173.1.S1_x_at6/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.38764.1.S1_x_at1/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19379OsAffx.28522.1.S1_at5/117+11469227..11469625NA
LOC_Os07g19390OsAffx.28522.1.S1_at1/117+11471598..11472551hypothetical protein
LOC_Os07g19400Os.24579.1.S1_at11/117+11477902..11480201pentatricopeptide, putative, expressed
LOC_Os07g19410Os.57125.1.S1_at10/117+11484120..11485507expressed protein
LOC_Os07g19420NANA7+11487286..11488683retrotransposon protein, putative, unclassified
LOC_Os07g19430NANA7+11489718..11490392retrotransposon protein, putative, unclassified
LOC_Os07g19444Os.25544.1.S1_at11/117+11495187..11503496regulatory protein, putative, expressed
LOC_Os07g19460Os.24751.1.S1_at8/117+11503911..11507933Mitochondrial carrier protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24579.1.S1_at--631--951Chr07:11479601..11479625 (25 bp)
AGGAAATGCTTGACCATACCCCTTT
LOC_Os07g19400
Os.24579.1.S1_at--967--3251Chr07:11479631..11479655 (25 bp)
CAACGTCGACTATGTGGGCAGCATT
LOC_Os07g19400
Os.24579.1.S1_at--253--4731Chr07:11479738..11479762 (25 bp)
GCTGGGCACTATGTTCTGATTGCTA
LOC_Os07g19400
Os.24579.1.S1_at--436--10731Chr07:11479757..11479781 (25 bp)
TTGCTAACATGTATGCAGCTGCTGG
LOC_Os07g19400
Os.24579.1.S1_at--545--2711Chr07:11479838..11479862 (25 bp)
AAGCACCTGGGTTAGCATGGACTGA
LOC_Os07g19400
Os.24579.1.S1_at--415--8531Chr07:11479855..11479879 (25 bp)
TGGACTGATCTTGGCAATGGGTTCA
LOC_Os07g19400
Os.24579.1.S1_at--93--9671Chr07:11479877..11479901 (25 bp)
TCACCCCTTTTTTAGTTGGAGATAG
LOC_Os07g19400
Os.24579.1.S1_at--709--1251Chr07:11479896..11479920 (25 bp)
AGATAGATCAAACCCTCTAGCACCG
LOC_Os07g19400
Os.24579.1.S1_at--452--3711Chr07:11479912..11479936 (25 bp)
CTAGCACCGGAGATCTATGTGGTTT
LOC_Os07g19400
Os.24579.1.S1_at--680--8151Chr07:11480036..11480060 (25 bp)
GGAAATGTTCTTGCTTTTTGTGTAG
LOC_Os07g19400
Os.24579.1.S1_at--109--8151Chr07:11480176..11480200 (25 bp)
GGACACTGCAACATATGTAGGTTTC
LOC_Os07g19400
Target Sequence 
AGGAAATGCTTGACCATACCCCTTTTCCTCCAACGTCGACTATGTGGGCAGCATTAGTTGGGGCTTGTCATGACAGAGGC
AACATAGAAATTGGTGAAAGGGCAGCAAGGAAACTTTTGGAAATGAGGACAGAGAATGCTGGGCACTATGTTCTGATTGC
TAACATGTATGCAGCTGCTGGTTGCTGGGATGAACTAGCAACAGTCAGGAAACTAATGCGTGACTTAGGTGTCACAAAAG
CACCTGGGTTAGCATGGACTGATCTTGGCAATGGGTTCACCCCTTTTTTAGTTGGAGATAGATCAAACCCTCTAGCACCG
GAGATCTATGTGGTTTTAGATGAATTATCTGAGCAAATGAGGAATATCAATAATTGCAGTGATCTAGACATATTAGCGGA
AAACATAGANTAAACAGGTAATGATAGGACGTGAAGGAAATGTTCTTGCTTTTTGTGTAGTAGAGATCACAATGAACTCC
AAAAATGAGATGGTGCAGTGAGTCACAAAGATCCAAAAAATGAAGCAGCAGCACATAGATATATGGATCAATTCTGGAGA
AAATTGCTACAAAATGGACACTGCAACATATGTAGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis