Browse Element(s) Details


OsAffx.28521.1.S1_at

Description gb:NM_188807.1
DB_XREF= gi:34904697
GEN=P0446G09.14
TID=OsAffx.28521.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0446G09.14 (P0446G09.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1935011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19310OsAffx.5375.1.S1_at11/117+11428869..11429193hypothetical protein
LOC_Os07g19310Os.10477.2.S1_x_at1/117+11428869..11429193hypothetical protein
LOC_Os07g19320OsAffx.22029.1.S1_at11/117+11430290..11434184NB-ARC domain containing protein
LOC_Os07g19330OsAffx.9850.1.S1_s_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19330OsAffx.9850.2.S1_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19340NANA7+11443742..11444970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19350OsAffx.28521.2.S1_s_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19350OsAffx.28521.1.S1_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19360NANA7+11454139..11454667retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.45173.1.S1_x_at6/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.38764.1.S1_x_at1/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19379OsAffx.28522.1.S1_at5/117+11469227..11469625NA
LOC_Os07g19390OsAffx.28522.1.S1_at1/117+11471598..11472551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28521.1.S1_at--305--451Chr07:11452172..11452196 (25 bp)
ATCTCATGTCATGCCAACCAATAGT
LOC_Os07g19350
OsAffx.28521.1.S1_at--82--771Chr07:11452167..11452191 (25 bp)
ATGTCATGCCAACCAATAGTCCTGC
LOC_Os07g19350
OsAffx.28521.1.S1_at--495--7111Chr07:11452165..11452189 (25 bp)
GTCATGCCAACCAATAGTCCTGCAT
LOC_Os07g19350
OsAffx.28521.1.S1_at--599--2651Chr07:11452157..11452181 (25 bp)
AACCAATAGTCCTGCATGGCACGAT
LOC_Os07g19350
OsAffx.28521.1.S1_at--113--3111Chr07:11452153..11452177 (25 bp)
AATAGTCCTGCATGGCACGATGAGT
LOC_Os07g19350
OsAffx.28521.1.S1_at--392--7251Chr07:11452149..11452173 (25 bp)
GTCCTGCATGGCACGATGAGTTCTT
LOC_Os07g19350
OsAffx.28521.1.S1_at--174--5011Chr07:11452144..11452168 (25 bp)
GCATGGCACGATGAGTTCTTGATTA
LOC_Os07g19350
OsAffx.28521.1.S1_at--376--8251Chr07:11452140..11452164 (25 bp)
GGCACGATGAGTTCTTGATTAAACA
LOC_Os07g19350
OsAffx.28521.1.S1_at--650--10491Chr07:11452122..11452146 (25 bp)
TTAAACATGATGAGCACACGACAGA
LOC_Os07g19350
OsAffx.28521.1.S1_at--102--8871Chr07:11452115..11452139 (25 bp)
TGATGAGCACACGACAGACACCAAT
LOC_Os07g19350
OsAffx.28521.1.S1_at--87--5951Chr07:11452111..11452135 (25 bp)
GAGCACACGACAGACACCAATGGCA
LOC_Os07g19350
Target Sequence 
ATCTCATGTCATGCCAACCAATAGTCCTGCATGGCACGATGAGTTCTTGATTAAACATGATGAGCACACGACAGACACCA
ATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis