Browse Element(s) Details


OsAffx.9850.1.S1_s_at

Description gb:NM_188811.1
DB_XREF= gi:34904705
GEN=P0446G09.18
TID=OsAffx.9850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0446G09.18 (P0446G09.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1933011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19290OsAffx.22028.1.S1_at11/117+11416294..11417842hypothetical protein
LOC_Os07g19300NANA7+11418861..11421764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19310OsAffx.5375.1.S1_at11/117+11428869..11429193hypothetical protein
LOC_Os07g19310Os.10477.2.S1_x_at1/117+11428869..11429193hypothetical protein
LOC_Os07g19320OsAffx.22029.1.S1_at11/117+11430290..11434184NB-ARC domain containing protein
LOC_Os07g19330OsAffx.9850.1.S1_s_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19330OsAffx.9850.2.S1_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19340NANA7+11443742..11444970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19350OsAffx.28521.2.S1_s_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19350OsAffx.28521.1.S1_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19360NANA7+11454139..11454667retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.45173.1.S1_x_at6/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.38764.1.S1_x_at1/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9850.1.S1_s_at--513--3331Chr07:11436590..11436614 (25 bp)
CACGGAAGGTATAGGTGGCACGCTT
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--1021--9371Chr07:11436563..11436587 (25 bp)
TCGGGCGTCCGCTCGTAGTGTTGCA
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--969--6931Chr07:11436549..11436573 (25 bp)
GTAGTGTTGCATCGTGCCAGTCATC
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--61--9211Chr07:11436535..11436559 (25 bp)
TGCCAGTCATCTCGCGCGGGCGTCA
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--714--9731Chr07:11436513..11436537 (25 bp)
TCAAGGACGGCGGCATTCCGGACGT
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--1085--71Chr07:11436499..11436523 (25 bp)
ATTCCGGACGTCGGGCAGGTCAGCT
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--611--8391Chr07:11436323..11436347 (25 bp)
GGCGCGGCGTCAGTATTTCAGGCCT
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--458--4011Chr07:11436316..11436340 (25 bp)
CGTCAGTATTTCAGGCCTGGTCGGG
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--272--1391Chr07:11436251..11436275 (25 bp)
AGACCGGCGGCATTGGATCAGTGTC
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--165--4271Chr07:11436248..11436272 (25 bp)
CCGGCGGCATTGGATCAGTGTCGAT
LOC_Os07g19330
OsAffx.9850.1.S1_s_at--219--411Chr07:11436235..11436259 (25 bp)
ATCAGTGTCGATGGGCGGCGGCTTC
LOC_Os07g19330
Target Sequence 
CACGGAAGGTATAGGTGGCACGCTTGGTCGGGCGTCCGCTCGTAGTGTTGCATCGTGCCAGTCATCTCGCGCGGGCGTCA
AGGACGGCGGCATTCCGGACGTCGGGCAGGTCAGCTTTGCAGGGGCGGCGTCGGTTGGTGGAGGAGCGCGGCGAGGTCAG
CGGCGGTCGCGGCAGGGCCTCGGGCGGCGCGGCGTCAGTATTTCAGGCCTGGTCGGGGTTGTCATGCCGTTGCGTCGCCG
CGGGCAGAGAGAGGGAGAGACCGGCGGCATTGGATCAGTGTCGATGGGCGGCGGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9850.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis