Browse Element(s) Details


OsAffx.5375.1.S1_at

Description tigr:9635.m01947
TID=OsAffx.5375.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1931011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19274NANA7+11403510..11408208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19290OsAffx.22028.1.S1_at11/117+11416294..11417842hypothetical protein
LOC_Os07g19300NANA7+11418861..11421764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19310OsAffx.5375.1.S1_at11/117+11428869..11429193hypothetical protein
LOC_Os07g19310Os.10477.2.S1_x_at1/117+11428869..11429193hypothetical protein
LOC_Os07g19320OsAffx.22029.1.S1_at11/117+11430290..11434184NB-ARC domain containing protein
LOC_Os07g19330OsAffx.9850.1.S1_s_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19330OsAffx.9850.2.S1_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19340NANA7+11443742..11444970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19350OsAffx.28521.2.S1_s_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19350OsAffx.28521.1.S1_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19360NANA7+11454139..11454667retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5375.1.S1_at--1134--6632Chr07:11429113..11429137 (25 bp)
GTTGACCTCTCCTGGCACCAAGAAC
LOC_Os07g19310
OsAffx.5375.1.S1_at--153--1711Chr07:11429097..11429121 (25 bp)
ACCAAGAACCTTCCCTGTGCAATGG
LOC_Os07g19310
OsAffx.5375.1.S1_at--211--5431Chr07:11429092..11429116 (25 bp)
GAACCTTCCCTGTGCAATGGGTCAT
LOC_Os07g19310
OsAffx.5375.1.S1_at--179--3212Chr07:11429078..11429102 (25 bp)
CAATGGGTCATTGGTGGACTCCTGC
LOC_Os07g19310
OsAffx.5375.1.S1_at--178--7531Chr07:11429065..11429089 (25 bp)
GTGGACTCCTGCATTGCCTCTAAAG
LOC_Os07g19310
OsAffx.5375.1.S1_at--197--4951Chr07:11429055..11429079 (25 bp)
GCATTGCCTCTAAAGCTCTACAAGC
LOC_Os07g19310
OsAffx.5375.1.S1_at--806--1573Chr02:8949169..8949193 (25 bp)
AGCTCTACAAGCCTAAGGTGTTTGA
NONE
OsAffx.5375.1.S1_at--294--1051Chr07:11429027..11429051 (25 bp)
AGGTGTTTGACGAGGTCTTCTCGGT
LOC_Os07g19310
OsAffx.5375.1.S1_at--596--1031Chr07:11429015..11429039 (25 bp)
AGGTCTTCTCGGTCTTAGTTCTGTT
LOC_Os07g19310
OsAffx.5375.1.S1_at--618--10431Chr07:11429002..11429025 (24 bp)
TTAGTTCTGTTTCTTGCTTTACGGG
LOC_Os07g19310
OsAffx.5375.1.S1_at--562--5791Chr07:11428911..11428935 (25 bp)
GACGAAGCTCGACAATGATGACATG
LOC_Os07g19310
Target Sequence 
GTTGACCTCTCCTGGCACCAAGAACCTTCCCTGTGCAATGGGTCATTGGTGGACTCCTGCATTGCCTCTAAAGCTCTACA
AGCCTAAGGTGTTTGACGAGGTCTTCTCGGTCTTAGTTCTGTTTCTTGCTTTACGGGGTGCGACGAAGCTCGACAATGAT
GACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis