Browse Element(s) Details


Os.23552.1.S1_at

Description gb:AK102836.1
DB_XREF= gi:32988045
TID=Os.23552.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109K02, full insert sequence.
FL= gb:AK059375.1 gb:AK102836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1947011/11Uncharacterized ACR, YggU family COG1872 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19420NANA7+11487286..11488683retrotransposon protein, putative, unclassified
LOC_Os07g19430NANA7+11489718..11490392retrotransposon protein, putative, unclassified
LOC_Os07g19444Os.25544.1.S1_at11/117+11495187..11503496regulatory protein, putative, expressed
LOC_Os07g19460Os.24751.1.S1_at8/117+11503911..11507933Mitochondrial carrier protein, expressed
LOC_Os07g19470Os.23552.1.S1_at11/117+11512208..11516466Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os07g19480NANA7+11525666..11526039hypothetical protein
LOC_Os07g19494Os.51082.1.S1_at11/117+11526306..11531984expressed protein
LOC_Os07g19494Os.16824.1.A1_at9/117+11526306..11531984expressed protein
LOC_Os07g19510NANA7+11533336..11539696retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23552.1.S1_at--410--6711Chr07:11512972..11512996 (25 bp)
GTTCGAGTAACAGTTGCTGCTCCTG
LOC_Os07g19470
Os.23552.1.S1_at--764--1011Chr07:11512744..11512768 (25 bp)
AGGTTCTTGGCTTAAGACTCAGTCA
LOC_Os07g19470
Os.23552.1.S1_at--1024--5691Chr07:11512729..11512753 (25 bp)
GACTCAGTCAGATGACCCTTCAAAG
LOC_Os07g19470
Os.23552.1.S1_at--602--5351Chr07:11512587..11512611 (25 bp)
GAAGATTTGTCAGCACGGCAAGTGT
LOC_Os07g19470
Os.23552.1.S1_at--352--5971Chr07:11512560..11512584 (25 bp)
GAGAAGCTCCTAGAAGCTGTCCAGC
LOC_Os07g19470
Os.23552.1.S1_at--314--2691Chr07:11512547..11512571 (25 bp)
AAGCTGTCCAGCCTTAAATTTGTGG
LOC_Os07g19470
Os.23552.1.S1_at--607--2251Chr07:11512532..11512556 (25 bp)
AAATTTGTGGCAGCTCCTAACGGAG
LOC_Os07g19470
Os.23552.1.S1_at--1060--4711Chr07:11512480..11512504 (25 bp)
GCTGGATTCATTAGCTTATCGGAGT
LOC_Os07g19470
Os.23552.1.S1_at--546--491Chr07:11512463..11512487 (25 bp)
ATCGGAGTTGCATTGTTTCGGTTGT
LOC_Os07g19470
Os.23552.1.S1_at--20--1291Chr07:11512416..11512440 (25 bp)
AGATGACCGTGATGTAACGCTGTCT
LOC_Os07g19470
Os.23552.1.S1_at--561--5831Chr07:11512318..11512342 (25 bp)
GACCAATTTCGAGTCCAAAGCTTAT
LOC_Os07g19470
Target Sequence 
GTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAACTACTAGAGTTCATGGGCAAGGTTCTTGG
CTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCNAAGCTTCTGATTGTTGAAGATTTGTCAGCAC
GGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGT
TTTGAAACNTTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATG
ACCGTGATGTAACGCTGTCTNTGTGTACCCTTCTTAGTTGNGATACAAACTGTACATCTTTATAACANTCCTGCAACGTT
TTTTTTTTTGGGTGACCAATTTCGAGTCCAAAGCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis