Browse Element(s) Details


Os.25206.1.A1_s_at

Description gb:CA762188
DB_XREF= gi:25806227
DB_XREF=BR060011A10E06.ab1
CLONE=BR060011A10E06.ab1
TID=Os.25206.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25206 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1953011/11Peptidase family M28 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19480NANA7+11525666..11526039hypothetical protein
LOC_Os07g19494Os.51082.1.S1_at11/117+11526306..11531984expressed protein
LOC_Os07g19494Os.16824.1.A1_at9/117+11526306..11531984expressed protein
LOC_Os07g19510NANA7+11533336..11539696retrotransposon protein, putative, unclassified
LOC_Os07g19520NANA7+11544775..11545269hypothetical protein
LOC_Os07g19530Os.25206.1.A1_s_at11/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.14681.1.A1_s_at10/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.25206.1.A1_x_at2/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19540NANA7+11581148..11581495expressed protein
LOC_Os07g19550Os.27438.2.S1_a_at4/117+11581345..11584125expressed protein
LOC_Os07g19550Os.27438.2.S1_x_at2/117+11581345..11584125expressed protein
LOC_Os07g19560Os.16358.1.S1_at11/117+11590646..11595170Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25206.1.A1_s_at--829--4431Chr07:11549568..11549592 (25 bp)
GCCATTTTATATTGAGTTATGTGGT
LOC_Os07g19530
Os.25206.1.A1_s_at--18--10211Chr07:11549561..11549585 (25 bp)
TATATTGAGTTATGTGGTTCTTTTC
LOC_Os07g19530
Os.25206.1.A1_s_at--19--231Chr07:11549560..11549584 (25 bp)
ATATTGAGTTATGTGGTTCTTTTCT
LOC_Os07g19530
Os.25206.1.A1_s_at--299--10231Chr07:11549559..11549583 (25 bp)
TATTGAGTTATGTGGTTCTTTTCTA
LOC_Os07g19530
Os.25206.1.A1_s_at--1058--51Chr07:11549558..11549582 (25 bp)
ATTGAGTTATGTGGTTCTTTTCTAC
LOC_Os07g19530
Os.25206.1.A1_s_at--258--10771Chr07:11549557..11549581 (25 bp)
TTGAGTTATGTGGTTCTTTTCTACC
LOC_Os07g19530
Os.25206.1.A1_s_at--192--8891Chr07:11549556..11549580 (25 bp)
TGAGTTATGTGGTTCTTTTCTACCC
LOC_Os07g19530
Os.25206.1.A1_s_at--96--7811Chr07:11549446..11549470 (25 bp)
GGTCGTCCGACATCAAATTGTAAAT
LOC_Os07g19530
Os.25206.1.A1_s_at--657--7191Chr07:11549445..11549469 (25 bp)
GTCGTCCGACATCAAATTGTAAATT
LOC_Os07g19530
Os.25206.1.A1_s_at--1056--9391Chr07:11549444..11549468 (25 bp)
TCGTCCGACATCAAATTGTAAATTT
LOC_Os07g19530
Os.25206.1.A1_s_at--538--7251Chr07:11549442..11549466 (25 bp)
GTCCGACATCAAATTGTAAATTTCT
LOC_Os07g19530
Target Sequence 
GCCATTTTATATTGAGTTATGTGGTTCTTTTCTACCCCCATTGGCGTGTTTGTAATATATTTGTAACAATATATGCTTTA
AGCCTGTAAATGTGGCTTCTGTTCATTTAGATTTTGCTACCCGGTCGTCCGACATCAAATTGTAAATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25206.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis