Browse Element(s) Details


Os.27438.2.S1_x_at

Description gb:AK064499.1
DB_XREF= gi:32974517
TID=Os.27438.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013166M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-D03, full insert sequence.
FL= gb:AK064499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0532011/11expressed protein
LOC_Os07g195502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05280Os.8747.3.S1_x_at4/118+2750622..2758811Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os08g05280Os.33750.2.S1_x_at2/118+2750622..2758811Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os08g05290NANA8+2764744..2767990Leucine Rich Repeat family protein, expressed
LOC_Os08g05300OsAffx.16837.1.S1_at11/118+2769246..2769894hypothetical protein
LOC_Os08g05310OsAffx.5715.1.S1_at11/118+2777971..2779011expressed protein
LOC_Os08g05320Os.27438.2.S1_x_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.2.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.1.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05330NANA8+2794535..2794789hypothetical protein
LOC_Os08g05340Os.53862.1.S1_at11/118+2801929..2806682expressed protein
LOC_Os08g05340Os.54533.1.S1_at1/118+2801929..2806682expressed protein
LOC_Os08g05350Os.50927.1.S1_at10/118+2810099..2811734expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27438.2.S1_x_at--759--9951Chr08:2782734..2782758 (25 bp)
TACGCCTCACGGCTGAGCAGATCGT
LOC_Os08g05320
Os.27438.2.S1_x_at--392--8911Chr08:2782721..2782745 (25 bp)
TGAGCAGATCGTGTGGCCCGATAAA
LOC_Os08g05320
Os.27438.2.S1_x_at--154--10571Chr08:2782560..2782664 (25 bp)
TTCTAGCTTCCACAGGTGACTATGC
LOC_Os08g05320
Os.27438.2.S1_x_at--653--2351Chr08:2782510..2782534 (25 bp)
AAAGCATGCTTCAGATACAGTTGGG
LOC_Os08g05320
Os.27438.2.S1_x_at--1003--7971Chr08:2782159..2782183 (25 bp)
GGATGCATTCCTTGATGCAAGACAG
LOC_Os08g05320
Os.27438.2.S1_x_at--507--2752Chr08:2782130..2782154 (25 bp)
AAGTGTCCAACCATTACGAATTTCT
LOC_Os08g05320
Os.27438.2.S1_x_at--725--6311Chr08:2781644..2781668 (25 bp)
GATGACTATTATCCTGGCTTGCCTA
LOC_Os08g05320
Os.27438.2.S1_x_at--317--552Chr08:2781548..2781572 (25 bp)
ATCCCCATCTTCTTTGAGGTATCTA
LOC_Os08g05320
Os.27438.2.S1_x_at--198--4391Chr08:2781510..2781534 (25 bp)
CCAATAGTTGTCGAAGAGTCATCTT
LOC_Os08g05320
Os.27438.2.S1_x_at--910--10791Chr08:2781470..2781494 (25 bp)
TTGGTGTGCCTATGTAAGTTTCTAC
LOC_Os08g05320
Os.27438.2.S1_x_at--786--9531Chr08:2781450..2781474 (25 bp)
TCTACATGTTGCATATATCCGACAG
LOC_Os08g05320
Target Sequence 
TACGCCTCACGGCTGAGCAGATCGTGTGGCCCGATAAAGNGATAAGTNCTGTCTNTTTCCTTGATCTGCTTCANCCNCCN
NCACCATCAACCCCTTCTAGCTTCCACAGGTGACTATGCATCTTGTANTTTCTAAGNTCTGCAAAAAAGCATGCTTCAGA
TACAGTTGGGGATATATACAGAACATCAAAATGGGAATATGGGATGCATTCCTTGATGCAAGACAGATAGAAGTGTCCAA
CCATTACGAATTTCTAAATCAAAGAATTCAGCACAGAAAGATAGGATGATTAATGTCGTTGAAGCGATGACTATTATCCT
GGCTTGCCTACGATCTTGGNATTTNNNNCTNNNCNNTNNNNNNANNTGCNNNNNNNNNNANNNNNNTNNNNTNNTCTTGG
CATCCCCATCTTCTTTGAGGTATCTAGATGGATATCATACCAATAGTTGTCGAAGAGTCATCTTTTAGGGAGATATGGTT
TGGTGTGCCTATGTAAGTTTCTACATGTTGCATATATCCGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27438.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis