Browse Element(s) Details


Os.53862.1.S1_at

Description gb:AK100458.1
DB_XREF= gi:32985667
TID=Os.53862.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091L02, full insert sequence.
FL= gb:AK100458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0534011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05310OsAffx.5715.1.S1_at11/118+2777971..2779011expressed protein
LOC_Os08g05320Os.27438.2.S1_x_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.2.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.1.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05330NANA8+2794535..2794789hypothetical protein
LOC_Os08g05340Os.53862.1.S1_at11/118+2801929..2806682expressed protein
LOC_Os08g05340Os.54533.1.S1_at1/118+2801929..2806682expressed protein
LOC_Os08g05350Os.50927.1.S1_at10/118+2810099..2811734expressed protein
LOC_Os08g05360OsAffx.13097.1.S1_s_at11/118+2816089..2823719transposon protein, putative, Mutator sub-class
LOC_Os08g05370OsAffx.29043.1.S1_at11/118+2826824..2828871hypothetical protein
LOC_Os08g05370Os.51931.1.S1_at1/118+2826824..2828871hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53862.1.S1_at--1113--3271Chr08:2806084..2806108 (25 bp)
CAAATTCCCGAGATTTCAAGCCTCT
LOC_Os08g05340
Os.53862.1.S1_at--21--2811Chr08:2806318..2806342 (25 bp)
AAGATAGGCTAATACTCCAGTAGAT
LOC_Os08g05340
Os.53862.1.S1_at--570--10431Chr08:2806357..2806381 (25 bp)
TTATCCTTGCTCTCAATATCGATGA
LOC_Os08g05340
Os.53862.1.S1_at--505--6331Chr08:2806386..2806410 (25 bp)
GATGCAGCTACTCCATCTGGAACTT
LOC_Os08g05340
Os.53862.1.S1_at--718--8171Chr08:2806404..2806428 (25 bp)
GGAACTTCCCAAGGCACAGAGTCTT
LOC_Os08g05340
Os.53862.1.S1_at--453--2931Chr08:2806505..2806529 (25 bp)
AAGGCAGTAATTCCCATGAGCTCAA
LOC_Os08g05340
Os.53862.1.S1_at--96--991Chr08:2806529..2806553 (25 bp)
AGGAGATTGTTGTCTCACCATAGCA
LOC_Os08g05340
Os.53862.1.S1_at--416--10011Chr08:2806549..2806573 (25 bp)
TAGCAACATGCAGCTTCATCATTGT
LOC_Os08g05340
Os.53862.1.S1_at--730--9591Chr08:2806564..2806588 (25 bp)
TCATCATTGTTTGCGTAATTGCGTT
LOC_Os08g05340
Os.53862.1.S1_at--1048--3451Chr08:2806613..2806637 (25 bp)
CAGTGTAATGTTAATGTCCGTTCCA
LOC_Os08g05340
Os.53862.1.S1_at--632--7251Chr08:2806628..2806652 (25 bp)
GTCCGTTCCATTTGTTGTATACCAT
LOC_Os08g05340
Target Sequence 
CAAATTCCCGAGATTTCAAGCCTCTCAGAGCAAGTATAATAGTGAGCTATAAGCTTGCTATAAGCTTATGTGGAGGAGAG
AGGTAACAAAAAATCAAAGGTGTTGGCTCTCATGCAAGAGCTAACTTAACACAAACTCCAAGACAAAAACAATAAATGTA
TAAGTGAGAGATAGAGATAGGAGAAGAAAATTATAGCTAAACCTTATAGCTAATCTATTATATGTGTTAGCTTTAAGATA
GGCTAATACTCCAGTAGATAGTGAGCTCTATTATTATCCTTGCTCTCAATATCGATGAAGAAGATGCAGCTACTCCATCT
GGAACTTCCCAAGGCACAGAGTCTTGTAATAGCTAACTATTGTGCACACTAACTCTTGTTAAACTAAATTTAGTTGATGT
ATCAGCTCATCCCCCTAGGTGAAGGCAGTAATTCCCATGAGCTCAAGGAGATTGTTGTCTCACCATAGCAACATGCAGCT
TCATCATTGTTTGCGTAATTGCGTTTAGTGTGTAATTGTCTTAATATGCCAGTGTAATGTTAATGTCCGTTCCATTTGTT
GTATACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis