Browse Element(s) Details


Os.50927.1.S1_at

Description gb:AK059513.1
DB_XREF= gi:32969531
TID=Os.50927.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B07, full insert sequence.
FL= gb:AK059513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0535010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05320Os.27438.2.S1_x_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.2.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.1.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05330NANA8+2794535..2794789hypothetical protein
LOC_Os08g05340Os.53862.1.S1_at11/118+2801929..2806682expressed protein
LOC_Os08g05340Os.54533.1.S1_at1/118+2801929..2806682expressed protein
LOC_Os08g05350Os.50927.1.S1_at10/118+2810099..2811734expressed protein
LOC_Os08g05360OsAffx.13097.1.S1_s_at11/118+2816089..2823719transposon protein, putative, Mutator sub-class
LOC_Os08g05370OsAffx.29043.1.S1_at11/118+2826824..2828871hypothetical protein
LOC_Os08g05370Os.51931.1.S1_at1/118+2826824..2828871hypothetical protein
LOC_Os08g05380OsAffx.29044.1.S1_at11/118+2831783..2832390hypothetical protein
LOC_Os08g05390OsAffx.25936.1.S1_s_at9/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.7.S1_s_at8/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.2.S1_x_at4/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.5.S1_x_at2/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50927.1.S1_at--266--4851Chr08:2810851..2810875 (25 bp)
GCTACTCTTCTTGCTTCGGTACTCA
LOC_Os08g05350
Os.50927.1.S1_at--556--9431Chr08:2810836..2810860 (25 bp)
TCGGTACTCACCTCACATAGAAAAA
LOC_Os08g05350
Os.50927.1.S1_at--785--2331Chr08:2810815..2810838 (24 bp)
AAACTTCGCCTGCAACTTACCAAGC
LOC_Os08g05350
Os.50927.1.S1_at--670--4351Chr08:2810262..2810286 (25 bp)
CCAATTATCAGAACAGCGAGCTCAT
LOC_Os08g05350
Os.50927.1.S1_at--238--6731Chr08:2810215..2810239 (25 bp)
GTTCTTAGTTTCTGAACAGCCAAGT
LOC_Os08g05350
Os.50927.1.S1_at--879--3371Chr08:2810199..2810223 (25 bp)
CAGCCAAGTGTTCTGAAGCTTCTCA
LOC_Os08g05350
Os.50927.1.S1_at--749--10471Chr08:2810167..2810191 (25 bp)
TTACAATCCGGCTGTTTTTCTGTTT
LOC_Os08g05350
Os.50927.1.S1_at--1080--8931Chr08:2810136..2810160 (25 bp)
TGACGGTACTTTCTCACTTGTCCAT
LOC_Os08g05350
Os.50927.1.S1_at--934--7011Chr08:2810131..2810155 (25 bp)
GTACTTTCTCACTTGTCCATTTCAA
LOC_Os08g05350
Os.50927.1.S1_at--169--7271Chr08:2810117..2810141 (25 bp)
GTCCATTTCAAGATTGCGATTTGCA
LOC_Os08g05350
Os.50927.1.S1_at--1090--171Chr08:2810099..2810123 (25 bp)
ATTTGCAAACTTCTTATGTGCGACC
NONE
Target Sequence 
GCTACTCTTCTTGCTTCGGTACTCACCTCACATAGAAAAACTTCGCCTGCAACTTACCAAGCTTGGAGCTGAGGAGTATG
AGAAGTTTCCAACTGCTGCAGCAGCAATAGATCCTCCATGCAAAGAAGCAGCAAGAACGTTTCATTGTGAAAAACTTACA
GAGATTGAAATCGTCTACCCTCAGGGCGATAAAAGGGTGCACATCATTGTGAGGATATTGATTGCGAACATTAGCCCTCT
CCCTGAAATTAAAATCAAGCCCTTTCCGAAATCCGGATTATCATGGTGATCTGTGGATTTTGGTGACTGAGGTGTCTATC
TGGCTGGATTAGATATTCTGATACCAAGGATGATGTTTTTGGAAGACTTGTTCAGCTATCCTTTATGTTCATAGTGCATG
TCTGCAGGAACCAATTATCAGAACAGCGAGCTCATCATCATCAGACGAACCAATTATGTTCTTAGTTTCTGAACAGCCAA
GTGTTCTGAAGCTTCTCATTCCTGTTTACAATCCGGCTGTTTTTCTGTTTCCTGTATGACGGTACTTTCTCACTTGTCCA
TTTCAAGATTGCGATTTGCAAACTTCTTATGTGCGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis