Browse Element(s) Details


OsAffx.29044.1.S1_at

Description tigr:9636.m00466
TID=OsAffx.29044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0538011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05350Os.50927.1.S1_at10/118+2810099..2811734expressed protein
LOC_Os08g05360OsAffx.13097.1.S1_s_at11/118+2816089..2823719transposon protein, putative, Mutator sub-class
LOC_Os08g05370OsAffx.29043.1.S1_at11/118+2826824..2828871hypothetical protein
LOC_Os08g05370Os.51931.1.S1_at1/118+2826824..2828871hypothetical protein
LOC_Os08g05380OsAffx.29044.1.S1_at11/118+2831783..2832390hypothetical protein
LOC_Os08g05390OsAffx.25936.1.S1_s_at9/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.7.S1_s_at8/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.2.S1_x_at4/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.5.S1_x_at2/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05400NANA8+2839514..2841489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05410OsAffx.29045.1.S1_at11/118+2846115..2851266hypothetical protein
LOC_Os08g05410OsAffx.29043.1.S1_at1/118+2846115..2851266hypothetical protein
LOC_Os08g05420NANA8+2853325..2858701transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29044.1.S1_at--500--8391Chr08:2831852..2831876 (25 bp)
GGCGCAGGCGTAAGCACGCTCGCTG
LOC_Os08g05380
OsAffx.29044.1.S1_at--140--6171Chr08:2831899..2832333 (25 bp)
GAGGAGGACGTGTTCACTAATCCCA
LOC_Os08g05380
OsAffx.29044.1.S1_at--158--6195Chr08:12043832..12044046 (25 bp)
GAGGACGTGTTCACTAATCCCACTA
NONE
OsAffx.29044.1.S1_at--424--8115Chr08:12044028..12044048 (21 bp)
GGACGTGTTCACTAATCCCACTAAG
NONE
OsAffx.29044.1.S1_at--286--1914Chr08:12044028..12044050 (23 bp)
ACGTGTTCACTAATCCCACTAAGCA
NONE
OsAffx.29044.1.S1_at--254--7434Chr08:12044028..12044052 (25 bp)
GTGTTCACTAATCCCACTAAGCAAT
NONE
OsAffx.29044.1.S1_at--830--6754Chr08:12044030..12044054 (25 bp)
GTTCACTAATCCCACTAAGCAATGA
NONE
OsAffx.29044.1.S1_at--493--1855Chr08:12044034..12044058 (25 bp)
ACTAATCCCACTAAGCAATGACGCC
NONE
OsAffx.29044.1.S1_at--280--534Chr08:12044038..12044062 (25 bp)
ATCCCACTAAGCAATGACGCCGAGA
NONE
OsAffx.29044.1.S1_at--872--2015Chr08:12044043..12044067 (25 bp)
ACTAAGCAATGACGCCGAGACTACG
NONE
OsAffx.29044.1.S1_at--220--2735Chr08:12044046..12044070 (25 bp)
AAGCAATGACGCCGAGACTACGAGC
NONE
Target Sequence 
GGCGCAGGCGTAAGCACGCTCGCTGGGATGCGATGCGACGGGGGGCGGAGGAGGACGTGTTCACTAATCCCACTAAGCAA
TGACGCCGAGACTACGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis