Browse Element(s) Details


OsAffx.5715.1.S1_at

Description tigr:9636.m00459
TID=OsAffx.5715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0531011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05280Os.8747.3.S1_x_at4/118+2750622..2758811Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os08g05280Os.33750.2.S1_x_at2/118+2750622..2758811Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os08g05290NANA8+2764744..2767990Leucine Rich Repeat family protein, expressed
LOC_Os08g05300OsAffx.16837.1.S1_at11/118+2769246..2769894hypothetical protein
LOC_Os08g05310OsAffx.5715.1.S1_at11/118+2777971..2779011expressed protein
LOC_Os08g05320Os.27438.2.S1_x_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.2.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.1.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05330NANA8+2794535..2794789hypothetical protein
LOC_Os08g05340Os.53862.1.S1_at11/118+2801929..2806682expressed protein
LOC_Os08g05340Os.54533.1.S1_at1/118+2801929..2806682expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5715.1.S1_at--177--7711Chr08:2778173..2778197 (25 bp)
GGGTGCCAACAGATGAACTTACTAT
LOC_Os08g05310
OsAffx.5715.1.S1_at--1123--6731Chr08:2778226..2778250 (25 bp)
GTTCACAGTAGCGACACACAGTTGT
LOC_Os08g05310
OsAffx.5715.1.S1_at--362--1211Chr08:2778245..2778269 (25 bp)
AGTTGTTTATCCTGACTACAGCCCA
LOC_Os08g05310
OsAffx.5715.1.S1_at--253--1671Chr08:2778264..2778288 (25 bp)
AGCCCATGCAGTTGATTGTGTGTTC
LOC_Os08g05310
OsAffx.5715.1.S1_at--240--7711Chr08:2778296..2778320 (25 bp)
GGGTGCACCAAGTCACTGCTGAAGA
LOC_Os08g05310
OsAffx.5715.1.S1_at--237--5371Chr08:2778316..2778340 (25 bp)
GAAGAGCTCAACTTGGTCTTCCTGT
LOC_Os08g05310
OsAffx.5715.1.S1_at--369--6871Chr08:2778339..2778363 (25 bp)
GTTTGGTGTGGCCTGTACTCATCAC
LOC_Os08g05310
OsAffx.5715.1.S1_at--343--7011Chr08:2778353..2778377 (25 bp)
GTACTCATCACGAGGCGCAGATTCA
LOC_Os08g05310
OsAffx.5715.1.S1_at--495--6351Chr08:2778427..2778451 (25 bp)
GATGCGCATGTGGTAGCCCTTGACA
LOC_Os08g05310
OsAffx.5715.1.S1_at--1149--1331Chr08:2778584..2778607 (24 bp)
AGAGTGATCTATCCCTTTTGCAAGT
LOC_Os08g05310
OsAffx.5715.1.S1_at--376--3431Chr08:2778855..2778879 (25 bp)
CAGAGAGTTTCTTACCAATGCATTG
LOC_Os08g05310
Target Sequence 
GGGTGCCAACAGATGAACTTACTATTAAGAGACGACAACAGACTGGATTTGTCGTTCACAGTAGCGACACACAGTTGTTT
ATCCTGACTACAGCCCATGCAGTTGATTGTGTGTTCAAAAAAGGGGTGCACCAAGTCACTGCTGAAGAGCTCAACTTGGT
CTTCCTGTTTGGTGTGGCCTGTACTCATCACGAGGCGCAGATTCAGGCAGATTACCCTGATGGGAATGTATCTGAGCTGT
TGAGATCATATTGCGATGCGCATGTGGTAGCCCTTGACATTGAGAAGGATCTTCTTCTTCTTGCAGTAACAAAGGACGAG
CTGTGCTTGCAAGACGTAGATGTTGGTGGGGTGTTTGTCCCATGTTCCAGTGATCATCCTATCATTCACCTGGCCGATTT
GCCTCCTGAGCAGAGTGATCTATCCCTTTTGCAAGTGATGGTGGATGCTAAATGTGGGTATGCAATTTGTTTGGAGGATG
TCAGAGAGTTTCTTACCAATGCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis