Browse Element(s) Details


OsAffx.16837.1.S1_at

Description tigr:9636.m00458
TID=OsAffx.16837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0530011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05270NANA8+2744645..2747321hypothetical protein
LOC_Os08g05280Os.8747.3.S1_x_at4/118+2750622..2758811Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os08g05280Os.33750.2.S1_x_at2/118+2750622..2758811Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os08g05290NANA8+2764744..2767990Leucine Rich Repeat family protein, expressed
LOC_Os08g05300OsAffx.16837.1.S1_at11/118+2769246..2769894hypothetical protein
LOC_Os08g05310OsAffx.5715.1.S1_at11/118+2777971..2779011expressed protein
LOC_Os08g05320Os.27438.2.S1_x_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.2.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05320Os.27438.1.S1_a_at11/118+2779881..2785838expressed protein
LOC_Os08g05330NANA8+2794535..2794789hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16837.1.S1_at--1023--3191Chr08:2769533..2769555 (23 bp)
CAATGAGTACTGGAGCTATGCGGCG
LOC_Os08g05300
OsAffx.16837.1.S1_at--1105--4091Chr08:2769558..2769582 (25 bp)
CGACGGCAGCATCTACCTGTTCAGC
LOC_Os08g05300
OsAffx.16837.1.S1_at--864--4171Chr08:2769589..2769613 (25 bp)
CCCAGCACCGAAGGCCAGTGGAGGA
LOC_Os08g05300
OsAffx.16837.1.S1_at--1013--5731Chr08:2769646..2769670 (25 bp)
GACGGCACCTACATCGGCCGGAGGA
LOC_Os08g05300
OsAffx.16837.1.S1_at--1057--7991Chr08:2769665..2769689 (25 bp)
GGAGGACAACCTGGGTCATCTTCGA
LOC_Os08g05300
OsAffx.16837.1.S1_at--786--7691Chr08:2769677..2769701 (25 bp)
GGGTCATCTTCGACCGGGTCAACGG
LOC_Os08g05300
OsAffx.16837.1.S1_at--1002--8431Chr08:2769708..2769732 (25 bp)
GGCCATGGAAGAGTTCTGCACCTAC
LOC_Os08g05300
OsAffx.16837.1.S1_at--374--2791Chr08:2769716..2769740 (25 bp)
AAGAGTTCTGCACCTACCACAACGA
LOC_Os08g05300
OsAffx.16837.1.S1_at--712--4651Chr08:2769755..2769779 (25 bp)
GCGTCGCCGAAGATGTACGGCTTTA
LOC_Os08g05300
OsAffx.16837.1.S1_at--19--1291Chr08:2769765..2769789 (25 bp)
AGATGTACGGCTTTACCGGATCTAC
LOC_Os08g05300
OsAffx.16837.1.S1_at--1130--6471Chr08:2769773..2769797 (25 bp)
GGCTTTACCGGATCTACCGCCGGAT
LOC_Os08g05300
Target Sequence
CAATGAGTACTGGAGCTATGCGGCGGACGACGGCAGCATCTACCTGTTCAGCCCGGGGCCCAGCACCGAAGGCCAGTGGA
GGACGGCGACGGCGGCGAGGTCGATCACCACGGCCGACGGCACCTACATCGGCCGGAGGACAACCTGGGTCATCTTCGAC
CGGGTCAACGGCGGCTGGGCCATGGAAGAGTTCTGCACCTACCACAACGACGGCGGCGGCGGTGGCGTCGCCGAAGATGT
ACGGCTTTACCGGATCTACCGCCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis