Browse Element(s) Details


Os.14681.1.A1_s_at

Description gb:CB674667
DB_XREF= gi:29678392
DB_XREF=OSJNEe09N09.r
CLONE=OSJNEe09N09
TID=Os.14681.1
CNT=8
FEA=EST
TIER=Stack
STK=6
UG=Os.14681 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T02164 (A.thaliana) T02164 hypothetical protein T1F15.12 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1953010/11Peptidase family M28 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19480NANA7+11525666..11526039hypothetical protein
LOC_Os07g19494Os.51082.1.S1_at11/117+11526306..11531984expressed protein
LOC_Os07g19494Os.16824.1.A1_at9/117+11526306..11531984expressed protein
LOC_Os07g19510NANA7+11533336..11539696retrotransposon protein, putative, unclassified
LOC_Os07g19520NANA7+11544775..11545269hypothetical protein
LOC_Os07g19530Os.25206.1.A1_s_at11/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.14681.1.A1_s_at10/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.25206.1.A1_x_at2/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19540NANA7+11581148..11581495expressed protein
LOC_Os07g19550Os.27438.2.S1_a_at4/117+11581345..11584125expressed protein
LOC_Os07g19550Os.27438.2.S1_x_at2/117+11581345..11584125expressed protein
LOC_Os07g19560Os.16358.1.S1_at11/117+11590646..11595170Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14681.1.A1_s_at--1012--7971Chr07:11551563..11551587 (25 bp)
GGATGCATCTTGAGCTTTCACTTGG
LOC_Os07g19530
Os.14681.1.A1_s_at--370--4891NONE
GCTTTCACTTGGTTCATTATCGGAG
NONE
Os.14681.1.A1_s_at--601--6051Chr07:11551430..11551454 (25 bp)
GAGATTTGGACCTCTGTGCTTAATA
LOC_Os07g19530
Os.14681.1.A1_s_at--243--6511Chr07:11551288..11551397 (25 bp)
GATATGACACTTCCAGATCCTCAAA
LOC_Os07g19530
Os.14681.1.A1_s_at--1064--9231Chr07:11551271..11551295 (25 bp)
TCCTCAAAGTTTTAGTGGCGGGCCA
LOC_Os07g19530
Os.14681.1.A1_s_at--1057--8351Chr07:11551255..11551279 (25 bp)
GGCGGGCCACCATCATATATATGCA
LOC_Os07g19530
Os.14681.1.A1_s_at--469--3091Chr07:11551210..11551231 (22 bp)
AATTGGTCTTTCTGGTTGGAGGCGA
LOC_Os07g19530
Os.14681.1.A1_s_at--372--6211Chr07:11549780..11549803 (24 bp)
GAGGCGAACTCTTCTGAACCTTTGA
LOC_Os07g19530
Os.14681.1.A1_s_at--558--5851Chr07:11549735..11549759 (25 bp)
GACCAGTATCTCCTTGATCGTACAA
LOC_Os07g19530
Os.14681.1.A1_s_at--707--5351Chr07:11549703..11549727 (25 bp)
GAAGAGTCTCTTCCCAAGTTGGGCA
LOC_Os07g19530
Os.14681.1.A1_s_at--445--1671Chr07:11549670..11549694 (25 bp)
AGCCTTCACAACATTTTTCTCAACT
LOC_Os07g19530
Target Sequence 
GGATGCATCTTGAGCTTTCACTTGGTTCATTATCGGAGATTTGGACCTCTGTGCTTAATATTACTGGACCACTATCAAAT
TGGTCCTTTTCTGATATGACACTTCCAGATCCTCAAAGTTTTAGTGGCGGGCCACCATCATATATATGCAGACTTAGTGG
AGAAAGCCACGAGAATTGGTCTTTCTGGTTGGAGGCGAACTCTTCTGAACCTTTGAGAATCGATGTAGCTGTACTTGACC
AGTATCTCCTTGATCGTACAAGGAAACTGAAGAGTCTCTTCCCAAGTTGGGCAGACATTACAGCCTTCACAACATTTTTC
TCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14681.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis