Browse Element(s) Details


Os.27179.1.S1_at

Description gb:AK062333.1
DB_XREF= gi:32972351
TID=Os.27179.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D12, full insert sequence.
FL= gb:AK062333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0533011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05320Os.14245.1.S1_s_at11/113+2560314..2562693expressed protein
LOC_Os03g05330Os.27179.1.S1_at11/113+2576121..2584586HEAT repeat family protein, expressed
LOC_Os03g05330OsAffx.24977.1.S1_x_at11/113+2576121..2584586HEAT repeat family protein, expressed
LOC_Os03g05340NANA3+2589151..2598108retrotransposon protein, putative, unclassified, expressed
LOC_Os03g05350NANA3+2598775..2603160retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.18.S1_x_at11/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.3.S1_x_at9/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.54071.1.S1_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_x_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_at3/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.17756.1.S1_x_at1/113+2603369..2616015retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27179.1.S1_at--124--8591Chr03:2584349..2584373 (25 bp)
TGGTCAAAACCAATCTCTGCTAGAT
LOC_Os03g05330
Os.27179.1.S1_at--1101--3051Chr03:2584360..2584384 (25 bp)
AATCTCTGCTAGATGTAACTCTGTA
LOC_Os03g05330
Os.27179.1.S1_at--1117--6991Chr03:2584395..2584419 (25 bp)
GTACGGTTTAGTCGTGCATGTGCAT
LOC_Os03g05330
Os.27179.1.S1_at--574--7331Chr03:2584408..2584432 (25 bp)
GTGCATGTGCATGACTGTAGATAAT
LOC_Os03g05330
Os.27179.1.S1_at--222--1351Chr03:2584436..2584460 (25 bp)
AGAGTTTTTGTGTAGGACATGCCAA
LOC_Os03g05330
Os.27179.1.S1_at--176--591Chr03:2584454..2584478 (25 bp)
ATGCCAATAGGCTTTCGGTAGCGAG
LOC_Os03g05330
Os.27179.1.S1_at--775--1091Chr03:2584477..2584501 (25 bp)
AGTGGCGGCTGTACAGAAATCCGTC
LOC_Os03g05330
Os.27179.1.S1_at--940--5571Chr03:2584492..2584516 (25 bp)
GAAATCCGTCACGTTCGTTGATTGT
LOC_Os03g05330
Os.27179.1.S1_at--309--3351Chr03:2584501..2584525 (25 bp)
CACGTTCGTTGATTGTTATTTCTTT
LOC_Os03g05330
Os.27179.1.S1_at--760--10411Chr03:2584525..2584549 (25 bp)
TTATTGATTGAATTCGCTCAGCAGT
LOC_Os03g05330
Os.27179.1.S1_at--578--5211Chr03:2584534..2584558 (25 bp)
GAATTCGCTCAGCAGTAAGCATGTA
LOC_Os03g05330
Target Sequence 
TGGTCAAAACCAATCTCTGCTAGATGTAACTCTGTAAATCGTGTATGTACGGTTTAGTCGTGCATGTGCATGACTGTAGA
TAATAGAAGAGTTTTTGTGTAGGACATGCCAATAGGCTTTCGGTAGCGAGTGGCGGCTGTACAGAAATCCGTCACGTTCG
TTGATTGTTATTTCTTTTATTGATTGAATTCGCTCAGCAGTAAGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis