Browse Element(s) Details


Os.23314.1.S1_at

Description gb:AK102483.1
DB_XREF= gi:32987692
TID=Os.23314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094L18, full insert sequence.
FL= gb:AK102483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g052304/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein
LOC_Os03g05230Os.23314.1.S1_at4/113+2513273..2514656expressed protein
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein
LOC_Os03g05260Os.23316.1.A1_at10/113+2522726..2525428Tankyrase 1, putative, expressed
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05280Os.33755.1.S1_at9/113+2532954..2538336Ras family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23314.1.S1_at--78--3351Chr03:2513636..2513656 (21 bp)
CACGCGGGCATAACGTCAGGTTTAT
LOC_Os03g05230
Os.23314.1.S1_at--310--1231Chr03:2513749..2513773 (25 bp)
AGTTCTCGTGATTCGTATTTGTCAG
LOC_Os03g05230
Os.23314.1.S1_at--663--9131Chr03:2513798..2513822 (25 bp)
TGCGTGGATTTTGTTCTCGGATATG
LOC_Os03g05230
Os.23314.1.S1_at--674--9771Chr03:2514377..2514399 (23 bp)
TAAGGACTCTTGCTTCTACTTCACA
LOC_Os03g05230
Os.23314.1.S1_at--1130--3431NONE
CAGTTGATCTGGTACTTTGCACTCC
NONE
Os.23314.1.S1_at--925--10271Chr03:2516639..2516663 (25 bp)
TTTGCACTCCATGTGTATTCCTGCG
NONE
Os.23314.1.S1_at--525--91Chr03:2516655..2516679 (25 bp)
ATTCCTGCGCTGTGTTCTACGAATA
NONE
Os.23314.1.S1_at--734--31Chr03:2516681..2516705 (25 bp)
ATTGGTGTAAAGCATCCCGCACGCT
NONE
Os.23314.1.S1_at--604--5091Chr03:2516699..2516723 (25 bp)
GCACGCTACCTGGAAGCAATGTTTT
NONE
Os.23314.1.S1_at--971--4351Chr03:2516739..2516763 (25 bp)
CCAACGGTGGCCTGATGAAAGTACT
NONE
Os.23314.1.S1_at--1153--5531Chr03:2516792..2516816 (25 bp)
GAAACATTTTCCTTGTCTGGTGATA
NONE
Target Sequence 
CACGCGGGCATAACGTCAGGTTTATTAGTTCTCGTGATTCGTATTTGTCAGTTCCACAAACTGGCGCCTGGCCTTTGCGT
GGATTTTGTTCTCGGATATGTATGCTACAGGATGAGTGTTTTAGCAGCGGAGCTGAAAAGAAATGGGAAAGCAAACAACA
TTTGTGCTAGGATACAGTTTGTTATTATGCTTTTGTTGTTCTGGGCTAACAATCCTATTAAGGACTCTTGCTTCTACTTC
ACACAGTTGATCTGGTACTTTGCACTCCATGTGTATTCCTGCGCTGTGTTCTACGAATACATTGGTGTAAAGCATCCCGC
ACGCTACCTGGAAGCAATGTTTTATACAATACTAACAACCAACGGTGGCCTGATGAAAGTACTTAAGTTCATGTTTTTGG
GACAAGAATGAGAAACATTTTCCTTGTCTGGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis