Browse Element(s) Details


Os.56558.1.S1_at

Description gb:AK110150.1
DB_XREF= gi:32995359
TID=Os.56558.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-161-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-161-E04, full insert sequence.
FL= gb:AK110150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0518011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein
LOC_Os03g05230Os.23314.1.S1_at4/113+2513273..2514656expressed protein
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56558.1.S1_at--826--7991Chr03:2495007..2495031 (25 bp)
GGATGTTCGGCGTCATTATGGCCTT
LOC_Os03g05180
Os.56558.1.S1_at--915--91Chr03:2495021..2495045 (25 bp)
ATTATGGCCTTCTGCGGCTCGAACA
LOC_Os03g05180
Os.56558.1.S1_at--352--6511Chr03:2495065..2495089 (25 bp)
GATTTGGACGAGCACGCTCCGGCTA
LOC_Os03g05180
Os.56558.1.S1_at--764--3691Chr03:2495087..2495111 (25 bp)
CTAGACATGCTAGCGCGGCGATCCA
LOC_Os03g05180
Os.56558.1.S1_at--87--471Chr03:2495111..2495135 (25 bp)
ATCTCTGCGAATTCGTGTGCGTTTT
LOC_Os03g05180
Os.56558.1.S1_at--447--5171Chr03:2495137..2495161 (25 bp)
GCAAGAGGTCACTCACTGATCACTG
LOC_Os03g05180
Os.56558.1.S1_at--42--8851Chr03:2495153..2495177 (25 bp)
TGATCACTGACTTTTGCTTGCTGCG
LOC_Os03g05180
Os.56558.1.S1_at--741--3831Chr03:2495173..2495197 (25 bp)
CTGCGTGTGCTCTGGATTGGCGATC
LOC_Os03g05180
Os.56558.1.S1_at--361--5071Chr03:2495232..2495256 (25 bp)
GCAGCCAAGCAAAGTACTACGGATT
LOC_Os03g05180
Os.56558.1.S1_at--1041--7471Chr03:2495280..2495304 (25 bp)
GTGTGTGCACACTACTGGATATTAA
LOC_Os03g05180
Os.56558.1.S1_at--765--8631Chr03:2495315..2495339 (25 bp)
TGGGAATCTGCAACGAAACGCACGT
LOC_Os03g05180
Target Sequence 
GGATGTTCGGCGTCATTATGGCCTTCTGCGGCTCGAACAGCGTCGGCAGCTGGTCCGGGATTTGGACGAGCACGCTCCGG
CTAGACATGCTAGCGCGGCGATCCATCTCTGCGAATTCGTGTGCGTTTTAGCAAGAGGTCACTCACTGATCACTGACTTT
TGCTTGCTGCGTGTGCTCTGGATTGGCGATCGCGCGCACGGTATTTATAGGCTTGGAATGCAGATGCAGCCAAGCAAAGT
ACTACGGATTTTGTACGATGTACGGGTGTGTGTGTGTGCACACTACTGGATATTAATCCCAGCAAATGGGAATCTGCAAC
GAAACGCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis