Browse Element(s) Details


OsAffx.3137.1.S1_x_at

Description tigr:9631.m00434
TID=OsAffx.3137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0514011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein
LOC_Os03g05090NANA3+2458525..2458992transposon protein, putative, unclassified
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3137.1.S1_x_at--971--9331Chr03:2475416..2475440 (25 bp)
TCGACGACAACATGGACGCCAAGAT
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--647--7731Chr03:2475286..2475310 (25 bp)
GGTGGATCAGAAGAGTGACATCTAC
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--87--411Chr03:2475281..2475305 (25 bp)
ATCAGAAGAGTGACATCTACAGCTT
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--140--1191Chr03:2475206..2475230 (25 bp)
AGTACGGCGAGAGCCAGGACATCGT
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--708--5651Chr03:2475189..2475213 (25 bp)
GACATCGTCGGGTGGATCAGGGAGC
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--400--8071Chr03:2475169..2475193 (25 bp)
GGAGCGGCTGCGCAGCAACACCGGG
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--569--4491Chr03:2475113..2475137 (25 bp)
GCCGCGTCGACCACGTACGGGAGGA
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--387--5851Chr03:2475105..2475129 (25 bp)
GACCACGTACGGGAGGAGATGCTGC
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--888--4671Chr03:2475066..2475090 (25 bp)
GCGGTGCTGTGCACGGCCAAGTCAC
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--439--8691Chr03:2475059..2475083 (25 bp)
TGTGCACGGCCAAGTCACCCAAGGA
LOC_Os03g05140
OsAffx.3137.1.S1_x_at--509--1731Chr03:2475027..2475051 (25 bp)
ACCATGCGCGACGTGGTGACCATGC
LOC_Os03g05140
Target Sequence 
TCGACGACAACATGGACGCCAAGATCGCCGACTTCGGCCTCGCCCGCGTCATGGCGCGCGCCCACGAGACCGTCTCCGTC
GTCGCCGGCTCGTACGGCTACATCGCGCCGGAGTACGGGTACACGCTGAAGGTGGATCAGAAGAGTGACATCTACAGCTT
CGGTGTCGTCCTCATGGAGCTCCTCACCGGACGGCGGCCGATCGAGCCGGAGTACGGCGAGAGCCAGGACATCGTCGGGT
GGATCAGGGAGCGGCTGCGCAGCAACACCGGGGTGGAGGAGCTTCTCGACGCCAGCGTCGGCGGCCGCGTCGACCACGTA
CGGGAGGAGATGCTGCTGGTGCTGCGGGTGGCGGTGCTGTGCACGGCCAAGTCACCCAAGGACCGGCCCACCATGCGCGA
CGTGGTGACCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3137.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis