Browse Element(s) Details


OsAffx.12735.1.S1_x_at

Description tigr:9631.m00428
TID=OsAffx.12735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0508011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05030OsAffx.3136.1.S1_at11/113+2428537..2429364disease resistance-responsive family protein, putative
LOC_Os03g05040Os.52236.1.S1_at5/113+2429719..2434387expressed protein
LOC_Os03g05060Os.53691.1.S1_at11/113+2445571..2447451Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein
LOC_Os03g05090NANA3+2458525..2458992transposon protein, putative, unclassified
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12735.1.S1_x_at--563--4092Chr03:2453498..2453522 (25 bp)
CGACGACCAGGCGTTTGAGCAGGAG
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--1120--1932Chr03:2453524..2453548 (25 bp)
ACGGCGGTGGGAGGCACACGCGGCA
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--170--3311Chr03:2453538..2453891 (25 bp)
CACACGCGGCAGGTCCTAGAGAGGT
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--695--3351Chr03:2453540..2453893 (25 bp)
CACGCGGCAGGTCCTAGAGAGGTGT
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--111--4311Chr03:2453881..2453905 (25 bp)
CCTAGAGAGGTGTTCCGTGTTCATG
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--684--3711Chr03:2453882..2453906 (25 bp)
CTAGAGAGGTGTTCCGTGTTCATGT
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--1149--6011Chr03:2453885..2453909 (25 bp)
GAGAGGTGTTCCGTGTTCATGTGCG
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--964--6131Chr03:2453887..2453911 (25 bp)
GAGGTGTTCCGTGTTCATGTGCGGA
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--568--8791Chr03:2453898..2453922 (25 bp)
TGTTCATGTGCGGAATCTCCCAGTA
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--699--8691Chr03:2453904..2453928 (25 bp)
TGTGCGGAATCTCCCAGTACGTCAA
LOC_Os03g05080
OsAffx.12735.1.S1_x_at--991--3051Chr03:2453911..2453935 (25 bp)
AATCTCCCAGTACGTCAACCTGTGG
LOC_Os03g05080
Target Sequence 
CGACGACCAGGCGTTTGAGCAGGAGGACGGCGGTGGGAGGCACACGCGGCAGGTCCTAGAGAGGTGTTCCGTGTTCATGT
GCGGAATCTCCCAGTACGTCAACCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12735.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis