Browse Element(s) Details


Os.50602.1.S1_at

Description gb:AK122034.1
DB_XREF= gi:37991680
TID=Os.50602.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112K10, full insert sequence.
FL= gb:AK122034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0507011/11Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05020Os.14070.1.S1_s_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05020OsAffx.24968.1.S1_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05030OsAffx.3136.1.S1_at11/113+2428537..2429364disease resistance-responsive family protein, putative
LOC_Os03g05040Os.52236.1.S1_at5/113+2429719..2434387expressed protein
LOC_Os03g05060Os.53691.1.S1_at11/113+2445571..2447451Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein
LOC_Os03g05090NANA3+2458525..2458992transposon protein, putative, unclassified
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50602.1.S1_at--571--7011Chr03:2451586..2451610 (25 bp)
GTACACGCAGTACAAGTGGCACCTC
LOC_Os03g05070
Os.50602.1.S1_at--372--7311Chr03:2451617..2451641 (25 bp)
GTGCACGAAACCTACTCGGTGTTCA
LOC_Os03g05070
Os.50602.1.S1_at--688--10011Chr03:2451678..2451702 (25 bp)
TAGAGGAGACGCTCCGGAGGATCCC
LOC_Os03g05070
Os.50602.1.S1_at--900--2791Chr03:2451719..2451743 (25 bp)
AAGATGACGGAGACGGTGATCAGCC
LOC_Os03g05070
Os.50602.1.S1_at--313--9071Chr03:2451756..2451780 (25 bp)
TGCTCTACGCGGACCCTAGGTCGAA
LOC_Os03g05070
Os.50602.1.S1_at--730--9331Chr03:2451878..2451902 (25 bp)
TCGCGACTCTCAACGGCATTAGGTG
LOC_Os03g05070
Os.50602.1.S1_at--459--8011Chr03:2451914..2451938 (25 bp)
GGAGGTTTCCAATCGAGTTAGACCA
LOC_Os03g05070
Os.50602.1.S1_at--223--7051Chr03:2452029..2452053 (25 bp)
GTAATTTGATTTCACCTCACCGTAC
LOC_Os03g05070
Os.50602.1.S1_at--225--3751Chr03:2452044..2452068 (25 bp)
CTCACCGTACGTAGGTGGCCGAATG
LOC_Os03g05070
Os.50602.1.S1_at--102--3031Chr03:2452065..2452089 (25 bp)
AATGCTGAAGCATGCGTGTCTCTAT
LOC_Os03g05070
Os.50602.1.S1_at--1024--9131Chr03:2452077..2452101 (25 bp)
TGCGTGTCTCTATTGGTTGTGGGTA
LOC_Os03g05070
Target Sequence 
GTACACGCAGTACAAGTGGCACCTCCCCGACGTGCACGAAACCTACTCGGTGTTCATCGCCGAGGAGGACATCCGCAGCG
GCAACGTGAGCGTAGAGGAGACGCTCCGGAGGATCCCGCCGGACGTCGCGGAGAAGATGACGGAGACGGTGATCAGCCTC
GTGCCGAGGCTGCTCTACGCGGACCCTAGGTCGAAGCTGGAGACGGTCAAGGACGCCGTGGATTTGACGGTGGAGGCGGT
CATCGAGAGGGTCAAGAAGCTGAGGAAGGAGATGCACGGCGCCGGCGCGTCGTCGCGACTCTCAACGGCATTAGGTGCAA
ACACCAATGGAGGTTTCCAATCGAGTTAGACCAGATGACAAAAATAGTTAAAAGGGATATGATAGTTAAGTTGGAGAGCA
AAACATGGGATTTGAAGGAGTTTGATTTCATGTTTAAGAAAACGTAATTTGATTTCACCTCACCGTACGTAGGTGGCCGA
ATGCTGAAGCATGCGTGTCTCTATTGGTTGTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis