Browse Element(s) Details


OsAffx.3136.1.S1_at

Description tigr:9631.m00422
TID=OsAffx.3136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant disease resistance response protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0503011/11disease resistance-responsive family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05000Os.28943.1.S1_x_at1/113+2401005..2404238retrotransposon protein, putative, unclassified
LOC_Os03g05010NANA3+2405073..2407904retrotransposon protein, putative, unclassified
LOC_Os03g05020Os.14070.1.S1_s_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05020OsAffx.24968.1.S1_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05030OsAffx.3136.1.S1_at11/113+2428537..2429364disease resistance-responsive family protein, putative
LOC_Os03g05040Os.52236.1.S1_at5/113+2429719..2434387expressed protein
LOC_Os03g05060Os.53691.1.S1_at11/113+2445571..2447451Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3136.1.S1_at--346--391Chr03:2428783..2428807 (25 bp)
ATCACCGGCTTGCTCGGCAACATCT
LOC_Os03g05030
OsAffx.3136.1.S1_at--823--10671Chr03:2428792..2428816 (25 bp)
TTGCTCGGCAACATCTACAACGGGC
LOC_Os03g05030
OsAffx.3136.1.S1_at--765--8231Chr03:2428798..2428822 (25 bp)
GGCAACATCTACAACGGGCAGGTCC
LOC_Os03g05030
OsAffx.3136.1.S1_at--439--491Chr03:2428837..2428861 (25 bp)
ATCGGCTTCGCGACGCCCAAGAACG
LOC_Os03g05030
OsAffx.3136.1.S1_at--1145--3891Chr03:2428946..2428970 (25 bp)
CTGGTTTCCTGCAGCCGGCTAAGGG
LOC_Os03g05030
OsAffx.3136.1.S1_at--86--8391Chr03:2429167..2429191 (25 bp)
GGCGAGTACGGCGACACGCTCAACT
LOC_Os03g05030
OsAffx.3136.1.S1_at--1027--1131Chr03:2429171..2429195 (25 bp)
AGTACGGCGACACGCTCAACTTCTT
LOC_Os03g05030
OsAffx.3136.1.S1_at--916--7691Chr03:2429198..2429222 (25 bp)
GGGTCTACAAGGTGGGATCCACCAT
LOC_Os03g05030
OsAffx.3136.1.S1_at--222--7491Chr03:2429209..2429233 (25 bp)
GTGGGATCCACCATGTGCAAGCTGT
LOC_Os03g05030
OsAffx.3136.1.S1_at--695--7971Chr03:2429212..2429236 (25 bp)
GGATCCACCATGTGCAAGCTGTCCA
LOC_Os03g05030
OsAffx.3136.1.S1_at--1102--7331Chr03:2429223..2429247 (25 bp)
GTGCAAGCTGTCCATCACCGGCGGC
LOC_Os03g05030
Target Sequence 
ATCACCGGCTTGCTCGGCAACATCTACAACGGGCAGGTCCCCTTCGCGCGGCCCATCGGCTTCGCGACGCCCAAGAACGG
CGTCCCGATCCCCAACTCCAATGGCGCCATCCCCACGTACAACGGCAACAACGGCATCCCGCTGGACACCGGCCTCTCCG
GCGCTGGTTTCCTGCAGCCGGCTAAGGGCGCCTCGGCGGCGCAGGTGCAGCTCGGCCCCGACGGGCTCAGCCTCGGGTTC
GGCACCATCACCGTCATCGACGACGTCCTCACGAGCGGGCCGGACCTCGGCGCGCAGCCGCTCGGCCGCGCGCAGGGCGT
GTACGTGGCGAGCGCCGCCGACGGGTCGGCGCAGATGATGGCGTTCACGGCGATGATGGAGGGCGGCGAGTACGGCGACA
CGCTCAACTTCTTCGGGGTCTACAAGGTGGGATCCACCATGTGCAAGCTGTCCATCACCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis