Browse Element(s) Details


Os.53691.1.S1_at

Description gb:AK073950.1
DB_XREF= gi:32983973
TID=Os.53691.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072L14, full insert sequence.
FL= gb:AK073950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0506011/11Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05020Os.14070.1.S1_s_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05020OsAffx.24968.1.S1_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05030OsAffx.3136.1.S1_at11/113+2428537..2429364disease resistance-responsive family protein, putative
LOC_Os03g05040Os.52236.1.S1_at5/113+2429719..2434387expressed protein
LOC_Os03g05060Os.53691.1.S1_at11/113+2445571..2447451Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein
LOC_Os03g05090NANA3+2458525..2458992transposon protein, putative, unclassified
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53691.1.S1_at--30--1511Chr03:2446879..2446903 (25 bp)
AGCACGCCAAGTACTCGGTGTTCAT
LOC_Os03g05060
Os.53691.1.S1_at--618--7651Chr03:2447082..2447106 (25 bp)
GGGATCATCGACAGAATCGCCATGA
LOC_Os03g05060
Os.53691.1.S1_at--731--7531Chr03:2447129..2447153 (25 bp)
GTGGCTCCGGCCTAAACAATCTAGG
LOC_Os03g05060
Os.53691.1.S1_at--705--10091Chr03:2447150..2447174 (25 bp)
TAGGCAAGCACTAGACGCTCGACGA
LOC_Os03g05060
Os.53691.1.S1_at--632--7951Chr03:2447203..2447227 (25 bp)
GGATACTCGATCAATTTACAGCATG
LOC_Os03g05060
Os.53691.1.S1_at--260--251Chr03:2447240..2447264 (25 bp)
ATATCAATCATCAGTTTCGCTAGTT
LOC_Os03g05060
Os.53691.1.S1_at--440--8771Chr03:2447285..2447309 (25 bp)
TGTATACTTCTGTTTGTTCCAAAAT
LOC_Os03g05060
Os.53691.1.S1_at--287--2091Chr03:2447316..2447340 (25 bp)
ACATCAAGATTTGCACCTGTACGCC
LOC_Os03g05060
Os.53691.1.S1_at--318--1951Chr03:2447343..2447367 (25 bp)
ACGGCCACAGTTGTTGCAGTTTGCA
LOC_Os03g05060
Os.53691.1.S1_at--922--1251Chr03:2447367..2447391 (25 bp)
AGATTCTGATCCACGGCTGTACATG
LOC_Os03g05060
Os.53691.1.S1_at--788--7911Chr03:2447410..2447434 (25 bp)
GGTTGGAAAACACGTGCCTTAGCAC
LOC_Os03g05060
Target Sequence 
AGCACGCCAAGTACTCGGTGTTCATCTCCGAGCACGACGTGCGCGCCGGCAACGTGAGCATCGAGGCGACGCTCCGGGCG
ATCCCCGCCGCCACCGTGGAGCGGATGCGGGAGGAGGTGATCCGGCTCATCCCGTCGGTGATCTACGCCGACCCGAGGTC
GAAGCTGGAGACGGTGAGGGACGCCTTCGACGTCGCCGTCGAGGGGATCATCGACAGAATCGCCATGACCAGGGGAGGCT
ACGCGAGATCGTGGCTCCGGCCTAAACAATCTAGGCAAGCACTAGACGCTCGACGACGCAGACTAAGTTAATGAATTAAA
TGTAGGATACTCGATCAATTTACAGCATGTAGAACGAGTTGATATCAATCATCAGTTTCGCTAGTTGATACTATCATATA
GATCTTTGTATACTTCTGTTTGTTCCAAAATTCGTTTACATCAAGATTTGCACCTGTACGCCCCACGGCCACAGTTGTTG
CAGTTTGCAGATTCTGATCCACGGCTGTACATGTACGGACCGAATACGATCGGTTGGAAAACACGTGCCTTAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis