Browse Element(s) Details


Os.50959.1.S1_at

Description gb:AK059728.1
DB_XREF= gi:32969746
TID=Os.50959.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-D12, full insert sequence.
FL= gb:AK059728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2366011/11ZIM motif family protein, expressed
LOC_Os07g020401/11hypothetical protein
LOC_Os10g219401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23630NANA9+14038994..14039215hypothetical protein
LOC_Os09g23640NANA9+14045753..14049423ABC-2 type transporter family protein
LOC_Os09g23650Os.15565.1.A1_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23650OsAffx.31610.1.S1_x_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23660Os.50959.1.S1_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23660Os.14666.2.S1_x_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23670Os.35344.18.S1_x_at10/119+14067610..14070736hypothetical protein
LOC_Os09g23670Os.35344.3.S1_x_at9/119+14067610..14070736hypothetical protein
LOC_Os09g23670OsAffx.22940.5.S1_x_at3/119+14067610..14070736hypothetical protein
LOC_Os09g23680OsAffx.17862.1.S1_at11/119+14077033..14077377hypothetical protein
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50959.1.S1_at--686--3691Chr09:14057311..14057335 (25 bp)
CTATTATGCCGAGAGGTATGCCTAT
LOC_Os09g23660
Os.50959.1.S1_at--836--6151Chr09:14057299..14057323 (25 bp)
GAGGTATGCCTATTAATTGCTTGCA
LOC_Os09g23660
Os.50959.1.S1_at--540--71Chr09:14057284..14057308 (25 bp)
ATTGCTTGCATGAATTGTATTGTGA
LOC_Os09g23660
Os.50959.1.S1_at--561--6771Chr09:14057226..14057250 (25 bp)
GTTACAGTGTATGATTTATTTCTCT
LOC_Os09g23660
Os.50959.1.S1_at--519--10371Chr09:14057201..14057225 (25 bp)
TTTTTTCATTGCAGCTGTCCCTCAA
LOC_Os09g23660
Os.50959.1.S1_at--1062--4455Chr11:20382854..20382873 (20 bp)
GCCTAACTACCAATCTGACCTTACA
NONE
Os.50959.1.S1_at--607--3831Chr09:14057065..14057089 (25 bp)
CTGACCTTACATTTTTTAGTTTGCT
LOC_Os09g23660
Os.50959.1.S1_at--379--10475Chr07:8888110..8888131 (22 bp)
TTGACCCCGCTTTTCAAAATTGAGC
NONE
Os.50959.1.S1_at--612--2452Chr08:18760061..18760446 (25 bp)
AAAATTGAGCATGCCGTTTGACCCT
NONE
Os.50959.1.S1_at--105--8912Chr08:18760428..18760451 (24 bp)
TGAGCATGCCGTTTGACCCTATTTA
NONE
Os.50959.1.S1_at--1000--7771Chr09:14057004..14057028 (25 bp)
TGACCCTATTTACACTACGCCGTTA
LOC_Os09g23660
Target Sequence 
CTATTATGCCGAGAGGTATGCCTATTAATTGCTTGCATGAATTGTATTGTGATGTTATGATAGTAGTTAGAACTTCAGAT
GAATTGTTACAGTGTATGATTTATTTCTCTTTTTTTCATTGCAGCTGTCCCTCAAGCGCGGAAGGCATCCCTTGCCCGAT
TCTTGGAGAAGCGAAAGGAAAGGTAGAGATCATATATTTAAGGGACAATTGCTCATTTGACCCTGTTTCGAAGCCTAACT
ACCAATCTGACCTTACATTTTTTAGTTTGCTAATTTGACCCCGCTTTTCAAAATTGAGCATGCCGTTTGACCCTATTTAC
ACTACGCCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis