Browse Element(s) Details


Os.50964.1.S1_at

Description gb:AK059775.1
DB_XREF= gi:32969793
TID=Os.50964.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A06, full insert sequence.
FL= gb:AK059775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1725011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0016049biological_processcell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50964.1.S1_at--390--8691Chr01:9917889..9917913 (25 bp)
TGTGCTAGGCCGCTAATGCTTAAAT
LOC_Os01g17250
Os.50964.1.S1_at--11--6651Chr01:9917802..9917826 (25 bp)
GTTGTTCATTCGGTTCTGGTGAGAC
LOC_Os01g17250
Os.50964.1.S1_at--245--7771Chr01:9917785..9917809 (25 bp)
GGTGAGACCGTGATCTACTGGCAAA
LOC_Os01g17250
Os.50964.1.S1_at--828--2811Chr01:9917723..9917747 (25 bp)
AAGATTTTGTTCTGCCCATGTGGAA
LOC_Os01g17250
Os.50964.1.S1_at--972--9891Chr01:9917579..9917603 (25 bp)
TACTTTGCACGTTAGCTATGTCATC
LOC_Os01g17250
Os.50964.1.S1_at--459--6091Chr01:9917508..9917532 (25 bp)
GAGTACTCCTTGATCCTGCATGGAA
LOC_Os01g17250
Os.50964.1.S1_at--26--3251Chr01:9917471..9917495 (25 bp)
CAAGCTATATTCTCTATGTGCGCAA
LOC_Os01g17250
Os.50964.1.S1_at--323--6291Chr01:9917411..9917435 (25 bp)
GATGATTGTCGCGTTACCCATTGGC
LOC_Os01g17250
Os.50964.1.S1_at--321--9031Chr01:9917386..9917410 (25 bp)
TGCACAGTTCGCACGTGAGTTACTC
LOC_Os01g17250
Os.50964.1.S1_at--793--5091Chr01:9917356..9917380 (25 bp)
GCACGCCATGCATCTCGGGAACAAT
LOC_Os01g17250
Os.50964.1.S1_at--399--2231Chr01:9917336..9917360 (25 bp)
ACAATGCATCGCCTGCTAATGGTCA
LOC_Os01g17250
Target Sequence 
TGTGCTAGGCCGCTAATGCTTAAATACAGTTTCAAATGGATCTGTGAGTTAATTGACACCAGTTGGTGAAAGGGATATGG
TGATTTAGTTGTTCATTCGGTTCTGGTGAGACCGTGATCTACTGGCAAAGAACGTGATTTGTAGATTGTCATTTAATTTT
TTTTAAAAGATTTTGTTCTGCCCATGTGGAATCATCGTTGCAATACAGTTTGTCTGTAATAGTAAATGTTACTAGTTAGT
TTGTAGCAACAGTAAAGCTACTCACTATATAATATCTACTAATTACTTGCATGTAGTAGTTTGATATCAATACTTTGCAC
GTTAGCTATGTCATCATGTATTTGCATAATTATGCTGATGATAGCTATAAATGGAACCGGGGAGTACTCCTTGATCCTGC
ATGGAAATATCGCTGATGCAAGCTATATTCTCTATGTGCGCAATTGATCCACGTAAAACCAAAAAGCAATTATCCAATGA
TGATTGTCGCGTTACCCATTGGCTGCACAGTTCGCACGTGAGTTACTCCGCTAGCACGCCATGCATCTCGGGAACAATGC
ATCGCCTGCTAATGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis